Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine.
Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine.
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DOI：
10.1093/nar/gkv1208
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发表时间：
2016-01-04
影响因子：
14.9
通讯作者：
Hagen DE
中科院分区：
文献类型：
--
作者：
Elsik CG;Tayal A;Diesh CM;Unni DR;Emery ML;Nguyen HN;Hagen DE
我们报告了更新的Hydeltera基因组数据库（HGD）（http：HymenopteraGenome.org），Hydeltera目的昆虫物种（蚂蚁，蜜蜂和黄蜂）的模式生物数据库。HGD维护9种蜜蜂、10种蚂蚁和1种黄蜂的基因组数据，包括基因组测序联盟公布的基因组和注释数据集版本以及NCBI提供的版本。一个新的数据挖掘仓库，即HyperteraMine，以InterMine数据仓库系统为基础，将基因组数据与来自外部来源的数据结合起来，并促进基于同源法的跨物种分析。基于JBrowse/WebApollo的新的基因组浏览器和注释工具提供了简单的基因组导航和高通量序列数据集的查看，并可用于协作基因组注释。所有的基因组和注释数据集被组合到一个单一的BLAST服务器，允许用户选择和联合收割机序列数据集进行搜索。
We report an update of the Hymenoptera Genome Database (HGD) (http://HymenopteraGenome.org), a model organism database for insect species of the order Hymenoptera (ants, bees and wasps). HGD maintains genomic data for 9 bee species, 10 ant species and 1 wasp, including the versions of genome and annotation data sets published by the genome sequencing consortiums and those provided by NCBI. A new data-mining warehouse, HymenopteraMine, based on the InterMine data warehousing system, integrates the genome data with data from external sources and facilitates cross-species analyses based on orthology. New genome browsers and annotation tools based on JBrowse/WebApollo provide easy genome navigation, and viewing of high throughput sequence data sets and can be used for collaborative genome annotation. All of the genomes and annotation data sets are combined into a single BLAST server that allows users to select and combine sequence data sets to search.