Oryzabase. An integrated biological and genome information database for rice
Oryzabase. An integrated biological and genome information database for rice
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DOI：
10.1104/pp.105.063008
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发表时间：
2006-01-01
期刊：
影响因子：
7.4
通讯作者：
Yamazaki, Y
中科院分区：
文献类型：
--
作者：
Kurata, N;Yamazaki, Y
Oryzabase的目标是通过将生物学数据与分子基因组信息(http://www.shigen.nig.ac.jp/rice/oryzabase/top/top.jsp).相结合来创建水稻作为单子叶模式植物的全面视图该数据库包含有关水稻发育和解剖、水稻突变和遗传资源的信息，特别是野生水稻品种的遗传资源。对水稻发育的解剖学描述是独一无二的，也是已知的第一个水稻代表。发育和解剖学描述包括作为分期和组织标记的原位基因表达数据。大量水稻突变和突变性状基因的系统展示是必不可少的，对野生菌株、核心种质及其详细特征的研究也是必不可少的。在Oryzabase中还结合了几个具有完整基因组和cDNA序列的遗传、物理和表达图谱。这些数据集如果汇集在一起，可以为更多地了解水稻的生活史、表型和基因功能之间的关系以及水稻的遗传多样性提供有用的工具。为了交换社区信息，Oryzabase出版了由水稻遗传合作社组织的水稻遗传通讯，并提供邮寄服务，大米-e-net/大米-网。
The aim of Oryzabase is to create a comprehensive view of rice ( Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information (http://www.shigen.nig.ac.jp/rice/oryzabase/top/top.jsp). The database contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. The anatomical description of rice development is unique and is the first known representation for rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. The systematic presentation of a large number of rice mutant and mutant trait genes is indispensable, as is description of research in wild strains, core collections, and their detailed characterization. Several genetic, physical, and expression maps with full genome and cDNA sequences are also combined with biological data in Oryzabase. These datasets, when pooled together, could provide a useful tool for gaining greater knowledge about the life cycle of rice, the relationship between phenotype and gene function, and rice genetic diversity. For exchanging community information, Oryzabase publishes the Rice Genetics Newsletter organized by the Rice Genetics Cooperative and provides a mailing service, rice-e-net/rice-net.