Editorial: Plant and Cell Physiology's 2015 database issue.
Editorial: Plant and Cell Physiology's 2015 database issue.
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社论：植物和细胞生理学 2015 年数据库问题。
DOI：
10.1093/pcp/pcu206
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发表时间：
2015
影响因子：
4.9
通讯作者：
K. Yano
中科院分区：
文献类型：
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作者：
Hajime Ohyanagi;T. Obayashi;K. Yano
我们在此介绍 2015 年植物和细胞生理学 (PCP) 数据库问题（可在线获取：http://pcp.oxfordjournals.org/content/56/1.toc）。与过去的问题一样（Matsuoka 2011，Obayashi and Yano 2013，Obayashi and Yano 2014），今年我们的目标是提供一个有价值的在线资源和论坛，用于讨论生物信息学、新方法和在线工具，以帮助处理和分析可用于植物研究的大型生物数据集。数据库是有用的基础设施，是干湿实验室研究以及生物信息学方面科学进步的基础。此外，PCP 数据库问题的日益成功以及日本植物生理学家协会年会和世界各地基因组学会议上举行的“数据库会议”的众多参与者证明了它们的显着受欢迎以及在数据库中存储大规模生物数据集的必要性。如今，大量数据库中充斥着关于基因组、转录组、代谢组、蛋白质组和表型组以及许多其他实验资源的大量信息。生物数据库的发展和进步以及分析湿法和干法实验室技术是植物科学研究进步不可或缺的因素。借助下一代测序技术，包括有价值作物在内的许多植物物种的基因组和转录组信息已迅速积累，并存储在可搜索的在线数据库中。大量在线数据资源的可用性导致了针对作物改良的基因和蛋白质功能的发现和表征，例如全基因组关联研究、基因组选择和靶向基因组编辑。这些组学数据集在网络数据库中的整合将为研究人员提供大量所需的信息。然而，研究人员寻找最合适的数据库并不总是那么容易，该数据库提供了可靠且易于翻译的组学信息。 PCP 的数据库集合为研究人员提供了一个解决该问题的方案，提供了一个用于搜索最新植物相关组学数据库的一站式门户。 PCP 数据库问题每年出版一次，我们相信我们收集的过去、现在和未来的问题将为植物研究人员提供一个有价值的门户网站，其中包含新发布或更新的植物相关组学和工具库的最新信息，可供研究人员免费使用。下一步将进一步开发门户网站，以允许更方便用户的数据库搜索
We herewith present the 2015 Database Issue of Plant and Cell Physiology (PCP) (available online at http://pcp.oxfordjournals. org/content/56/1.toc). As with past issues (Matsuoka 2011, Obayashi and Yano 2013, Obayashi and Yano 2014), this year we aim to provide a valuable online resource and forum for the discussion of bioinformatics, novel approaches, and online tools to help handle and analyze large biological datasets available for plant research. Databases serve as a useful infrastructure upon which to base scientific advances in wet and dry lab research as well as bioinformatics. Further, the growing success of PCP’s database issues and the many participants for the ‘database sessions’ held at the annual meeting of the Japanese Society of Plant Physiologists and at genomics conferences world-wide prove their remarkable popularity and the increasing necessity to store large-scale biological datasets in databases. Today, an overwhelming amount of information on genome, transcriptome, metabolome, proteome, and phenome, as well as many other experimental resources flood through a number of databases. The development and progression of bio-databases together with analytical wet and dry lab technologies are indispensable factors for the advancement of plant science research. With next-generation sequencing technologies, genome and transcriptome information for many plant species including valuable crops have rapidly accumulated, and are stored in searchable online databases. The availability of numerous online data resources has led to the discovery and characterization of gene and protein functions geared towards crop improvement, such as in genome-wide association studies, genomic selection and targeted genome editing. The integration of these omics datasets in web databases will provide researchers with a wealth of desirable information. However it is not always easy for researchers to seek out the most suitable database, which provides reliable omics information that can be readily translatable. PCP’s database collection offers researchers a solution to this problem by providing a onestop portal for searching the latest plant-related omics databases. The PCP Database Issue is published annually and we believe that our collection of past, present and future issues will provide plant researchers with a valuable portal site housing the latest up to date information on newly released or updated plant-related omics and tool banks freely available to researchers. The next step will be to further develop the portal site to allow more user-friendly searches of the database
Plant-PrAS：植物蛋白质组理化和结构特性及比较分析的数据库
DOI：
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发表时间：
2016
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作者：
Atsushi Kurotani;Alexander Tokmakov;Yutaka Kuroda;Kazuo Shinozaki;Tetsuya Sakurai
通讯作者：
Tetsuya Sakurai
N.樱井；S.田中；S.仓石：植物
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影响因子：
4.9
作者：
Krishnakumar, Vivek;Choi, Yongwook;Chan, Agnes P.
通讯作者：
Chan, Agnes P.