BioPortal as a dataset of linked biomedical ontologies and terminologies in RDF
BioPortal as a dataset of linked biomedical ontologies and terminologies in RDF
复制标题
DOI：
10.3233/sw-2012-0086
复制
发表时间：
2013-01-01
期刊：
影响因子：
3
通讯作者：
Noy, Natalya F.
中科院分区：
文献类型：
--
作者：
Salvadores, Manuel;Alexander, Paul R.;Noy, Natalya F.
BioPortal是一个生物医学本体库，是最大的生物医学本体库，迄今为止拥有300多个本体。这个集合包括以OWL、OBO和其他格式开发的本体，以及美国国家医学图书馆以其专有格式分发的大量医学术语。我们已经在www.example.com上发布了所有这些本体的RDF版本。这个数据集包含1.9亿个三元组，代表了300个本体的元数据和内容。我们使用本体作者提供的元数据和简单的RDFS推理，以便为数据集用户提供对本体的关键属性的统一访问，例如类名和出处数据的词法属性。该数据集还包含980万个不同类型的跨本体映射，这些映射都是手动和自动生成的，并带有自己的元数据。
BioPortal is a repository of biomedical ontologies - the largest such repository, with more than 300 ontologies to date. This set includes ontologies that were developed in OWL, OBO and other formats, as well as a large number of medical terminologies that the US National Library of Medicine distributes in its own proprietary format. We have published the RDF version of all these ontologies at http://sparql.bioontology.org. This dataset contains 190M triples, representing both metadata and content for the 300 ontologies. We use the metadata that the ontology authors provide and simple RDFS reasoning in order to provide dataset users with uniform access to key properties of the ontologies, such as lexical properties for the class names and provenance data. The dataset also contains 9.8M cross-ontology mappings of different types, generated both manually and automatically, which come with their own metadata.