One stop shop: backbones trees for important phytopathogenic genera: I (2014)
One stop shop: backbones trees for important phytopathogenic genera: I (2014)
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DOI：
10.1007/s13225-014-0298-1
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发表时间：
2014-07-01
期刊：
影响因子：
20.3
通讯作者：
Zhou, Nan
中科院分区：
文献类型：
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作者：
Hyde, Kevin D.;Nilsson, R. Henrik;Zhou, Nan
许多真菌对植物具有致病性，并在农业和林业中造成重大损害。它们也是自然生态系统的一部分，可能在调节植物数量/密度方面发挥作用。植物病原真菌的形态学鉴定和分析虽然很重要，但往往受到缺乏区分性分类特征和这些真菌的内生或不明显性质的阻碍。植物病原真菌的分子（DNA序列）数据已成为诊断和分类研究的关键信息，尽管部分受到非标准实验室实践和分析方法的阻碍。为了促进当前和未来的研究，这项研究提供了系统发育概要25组植物病原真菌在子囊菌门，担子菌门，毛霉亚门（真菌），卵菌门，使用最近的分子数据，最新的名称，和最新的分类学见解。还提供了特定谱系的实验室协议及其应用建议，以及一般观察结果。我们希望随着时间的推移保持这些真菌谱系的更新骨干树，并在新数据出现时联合发布它们。本研究未涵盖的植物病原真菌的研究人员被邀请加入这一未来的努力。本文介绍了我国主要的病原真菌种类，包括：平脐蠕孢属、葡萄座腔菌科、葡萄座腔菌属、葡萄孢属、Choanephora属、炭疽菌属、弯孢属、透皮壳属、双孢属、多孢属、镰刀菌属、Gilbertella属、毛双孢属、毛霉属、新丛丝孢属、拟盘多毛孢属、叶点霉属、疫霉属、柄锈菌属、核腔菌属、腐霉属、根霉属、拟Stagonosporopsis属、黑粉菌属和轮枝菌属。
Many fungi are pathogenic on plants and cause significant damage in agriculture and forestry. They are also part of the natural ecosystem and may play a role in regulating plant numbers/density. Morphological identification and analysis of plant pathogenic fungi, while important, is often hampered by the scarcity of discriminatory taxonomic characters and the endophytic or inconspicuous nature of these fungi. Molecular (DNA sequence) data for plant pathogenic fungi have emerged as key information for diagnostic and classification studies, although hampered in part by non-standard laboratory practices and analytical methods. To facilitate current and future research, this study provides phylogenetic synopses for 25 groups of plant pathogenic fungi in the Ascomycota, Basidiomycota, Mucormycotina (Fungi), and Oomycota, using recent molecular data, up-to-date names, and the latest taxonomic insights. Lineage-specific laboratory protocols together with advice on their application, as well as general observations, are also provided. We hope to maintain updated backbone trees of these fungal lineages over time and to publish them jointly as new data emerge. Researchers of plant pathogenic fungi not covered by the present study are invited to join this future effort. Bipolaris, Botryosphaeriaceae, Botryosphaeria, Botrytis, Choanephora, Colletotrichum, Curvularia, Diaporthe, Diplodia, Dothiorella, Fusarium, Gilbertella, Lasiodiplodia, Mucor, Neofusicoccum, Pestalotiopsis, Phyllosticta, Phytophthora, Puccinia, Pyrenophora, Pythium, Rhizopus, Stagonosporopsis, Ustilago and Verticillium are dealt with in this paper.