The UCSC Table Browser data retrieval tool
The UCSC Table Browser data retrieval tool
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DOI：
10.1093/nar/gkh103
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发表时间：
2004-01-01
影响因子：
14.9
通讯作者：
Kent, WJ
中科院分区：
文献类型：
--
作者：
Karolchik, D;Hinrichs, AS;Kent, WJ
加州大学圣克鲁斯分校（UCSC）表格浏览器（genome.ucsc.edu/cgi-bin/ hgText）提供对存储在基因组浏览器数据库中的大量基因组组装和注释数据的基于文本的访问。作为基于图形的Genome Browser的灵活替代方案，该工具提供了增强的查询支持级别，包括基于字段值的限制、自由格式的SQL查询和多个表的组合查询。输出可以被过滤以限制返回的字段和行，并且可以被组织成几种格式之一，包括可以加载到电子表格或数据库中的简单制表符分隔的文件，以及可以作为自定义注释轨道上传到基因组浏览器中的高级格式。UCSC网站上的“表格浏览器用户指南”提供了构造查询和配置输出的说明和详细示例。
The University of California Santa Cruz (UCSC) Table Browser (http://genome.ucsc.edu/cgi-bin/ hgText) provides text-based access to a large collection of genome assemblies and annotation data stored in the Genome Browser Database. A flexible alternative to the graphical-based Genome Browser, this tool offers an enhanced level of query support that includes restrictions based on field values, free-form SQL queries and combined queries on multiple tables. Output can be filtered to restrict the fields and lines returned, and may be organized into one of several formats, including a simple tab-delimited file that can be loaded into a spreadsheet or database as well as advanced formats that may be uploaded into the Genome Browser as custom annotation tracks. The Table Browser User's Guide located on the UCSC website provides instructions and detailed examples for constructing queries and configuring output.