Tinker 8: Software Tools for Molecular Design.

Tinker 8: Software Tools for Molecular Design.
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DOI:
10.1021/acs.jctc.8b00529
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发表时间:
2018-10-09
影响因子:
5.5
通讯作者:
Ponder JW
Ponder JW
中科院分区:
化学1区
文献类型:
--
作者:
Rackers JA;Wang Z;Lu C;Laury ML;Lagardère L;Schnieders MJ;Piquemal JP;Ren P;Ponder JW

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Tinker软件目前作为第8版发布,是一个模块化的分子力学和动力学软件包,主要用标准的、易于移植的Fortran 95方言编写,带有OpenMP扩展。它支持各种各样的力场,包括基于现代极化原子多极的AMOEBA模型。该软件包可在Linux、macOS和Windows系统上运行。除了典型的Tinker之外,还有分支Tinker-HP和Tinker-OpenMM,分别设计用于MPI并行分布式内存超级计算机和最先进的图形处理单元(GPU)。Tinker套件还包括一个紧密集成的基于Java的图形用户界面,称为力场浏览器(FFE),它提供分子可视化功能以及启动和控制Tinker计算的能力。
The Tinker software, currently released as version 8, is a modular molecular mechanics and dynamics package written primarily in a standard, easily portable dialect of Fortran 95 with OpenMP extensions. It supports a wide variety of force fields, including the modern polarizable atomic multipole-based AMOEBA model. The package runs on Linux, macOS and Windows systems. In addition to canonical Tinker there are branches, Tinker-HP and Tinker-OpenMM, designed for use on MPI-parallel distributed memory supercomputers and on state-of-the-art graphical processing units (GPUs), respectively. The Tinker suite also includes a tightly integrated Java-based graphical user interface called Force Field Explorer (FFE), which provides molecular visualization capabilities as well as the ability to launch and control Tinker calculations.
DOI: 10.1016/0021-9991(76)90078-4
发表时间: 1976-01-01
影响因子: 4.1
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