MSATCOMMANDER: detection of microsatellite repeat arrays and automated, locus-specific primer design
MSATCOMMANDER: detection of microsatellite repeat arrays and automated, locus-specific primer design
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DOI：
10.1111/j.1471-8286.2007.01884.x
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发表时间：
2008-01-01
影响因子：
7.7
通讯作者：
Faircloth, Brant C.
中科院分区：
文献类型：
--
作者：
Faircloth, Brant C.
MSATCOMMANDER是一个独立于平台的程序，用于搜索微卫星阵列、设计引物和使用自动化程序标记引物。MSATCOMMANDER接受作为输入DNA序列数据在单序列或连接，fasta格式的文件。搜索数据和特定于语言环境的引语被写入逗号分隔的值文件中，以便在电子表格或数据库程序中后续使用。二进制版本的MSATCOMMANDER图形界面可用于苹果OS X和Windows XP。其他操作系统的用户可以使用可用的源代码运行图形界面版本，前提是他们的环境至少支持Python 2.4、Biopython 1.43和wxPython 2.8。MSATCOMMANDER可从http://code.google.com/p/msatcommander获得。
MSATCOMMANDER is a platform-independent program designed to search for microsatellite arrays, design primers, and tag primers using an automated routine. MSATCOMMANDER accepts as input DNA sequence data in single-sequence or concatenated, FASTA-formatted files. Search data and locus-specific primers are written to comma-separated value files for subsequent use in spreadsheet or database programs. Binary versions of the graphical interface for MSATCOMMANDER are available for Apple OS X and Windows XP. Users of other operating systems may run the graphical interface version using the available source code, provided their environment supports at least Python 2.4, Biopython 1.43, and wxPython 2.8. MSATCOMMANDER is available from http://code.google.com/p/msatcommander.