The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

The Arabidopsis Information Resource (TAIR): gene structure and function annotation.
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拟南芥信息资源(TAIR):基因结构和功能注释。

DOI:
10.1093/nar/gkm965
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发表时间:
2008-01
影响因子:
14.9
通讯作者:
Huala, Eva
Huala, Eva
中科院分区:
生物学2区
文献类型:
--
作者:
Swarbreck, David;Wilks, Christopher;Lamesch, Philippe;Berardini, Tanya Z.;Garcia-Hernandez, Margarita;Foerster, Hartmut;Li, Donghui;Meyer, Tom;Muller, Robert;Ploetz, Larry;Radenbaugh, Amie;Singh, Shanker;Swing, Vanessa;Tissier, Christophe;Zhang, Peifen;Huala, Eva

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拟南芥信息资源(TAIR, http://arabidopsis.org)是模式植物拟南芥全测序和深入研究的模式生物数据库。TAIR中的数据大部分来自拟南芥研究文献的人工整理和研究界的直接提交。TAIR的新发展包括在TAIR网站上增加了GBrowse基因组查看器,重新设计了主页、导航结构和门户页面,使网站更直观、更容易使用,推出了几个TAIR网络服务,并于2007年4月发布了新的基因组注释(TAIR7)。采用人工和计算相结合的方法生成该版本,该版本包含27 029个蛋白质编码基因,3889个假基因或转座元件和1123个ncrna(共32 041个基因,37 019个基因模型)。共增加681个新基因和1002个新剪接变异。总的来说,为TAIR7版本更新了10098个基因座(占以前TAIR6版本中所有基因座的三分之一)。
The Arabidopsis Information Resource (TAIR, http://arabidopsis.org) is the model organism database for the fully sequenced and intensively studied model plant Arabidopsis thaliana. Data in TAIR is derived in large part from manual curation of the Arabidopsis research literature and direct submissions from the research community. New developments at TAIR include the addition of the GBrowse genome viewer to the TAIR site, a redesigned home page, navigation structure and portal pages to make the site more intuitive and easier to use, the launch of several TAIR web services and a new genome annotation release (TAIR7) in April 2007. A combination of manual and computational methods were used to generate this release, which contains 27 029 protein-coding genes, 3889 pseudogenes or transposable elements and 1123 ncRNAs (32 041 genes in all, 37 019 gene models). A total of 681 new genes and 1002 new splice variants were added. Overall, 10 098 loci (one-third of all loci from the previous TAIR6 release) were updated for the TAIR7 release.
DOI: 10.1186/1741-7007-3-7
发表时间: 2005-03-22
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