mzML: A single, unifying data format for mass spectrometer output
mzML: A single, unifying data format for mass spectrometer output
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DOI：
10.1002/pmic.200890049
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发表时间：
2008-07-01
期刊：
影响因子：
3.4
通讯作者：
Deutsch, Eric
中科院分区：
文献类型：
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作者：
Deutsch, Eric
描述所有用例的蛋白质组学2008，8,2776-2777 2777，并编写写入和读取格式的软件。一种格式只有在两者都具备的情况下才能被认为是经过良好测试的。对于mzML，不仅有几个实例文档执行mzML所需的各种用例，还有几个软件程序在完成的最后阶段实现并测试了mzML。有一些转换程序可以将其他格式(如供应商格式或mzXML)转换为mzML。有一些数据处理管道，如跨蛋白质组管道，可以使用该格式进行进一步分析。有像Insilos查看器这样的文件浏览器。有一个官方验证器可用于测试mzML文件，以确保其格式正确，并提供几个允许的信息级别之一。许多这些初始应用程序的底层是软件库，它们处理大多数低级格式处理。当然，mzML的锻造不是从头开始的。设计师们确实有幸从已经在野外测试了几年的以前的格式开始，因此有可用的第一手证据来证明哪些功能被证明是必要的，哪些设计元素是成功的，哪些是造成问题的。
Proteomics 2008, 8, 2776–2777 2777 that depict all the use cases, and write software that writes and reads the format. A format cannot be considered well tested until there are both. For mzML, not only are there several instance documents that exercise the various use cases needed for mzML, there are several software programs that implemented, and thus tested, mzML in its final stages of completion. There are converters programs that transform other formats, such as vendor formats or mzXML, into mzML. There are data processing pipelines such as the Trans Proteomic Pipeline that can use the format for further analysis. There are file browsers like the Insilicos Viewer. There is an official validator that can be used to test an mzML file to ensure that it is properly formed and provides one of several permitted levels of information. And underlying many of these initial applications are software libraries that handle most of the lowlevel format handling.Of course, the forging of mzML did not begin from scratch. The designers did have the luxury of beginning with previous formats that had been tested in the wild for several years, and thus had available first-hand evidence of which features proved necessary, which design elements were successful, and which were causing problems.