A series of PDB related databases for everyday needs.
A series of PDB related databases for everyday needs.
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DOI：
10.1093/nar/gkq1105
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发表时间：
2011-01
影响因子：
14.9
通讯作者：
Vriend G
中科院分区：
文献类型：
--
作者：
Joosten RP;te Beek TA;Krieger E;Hekkelman ML;Hooft RW;Schneider R;Sander C;Vriend G
蛋白质数据库(PDB)是全球范围内的大分子结构信息库。我们提供了一系列与PDB并行运行的数据库。如果可能，每个数据库为每个PDB条目保存一个条目。DSSP具有蛋白质的二级结构。PDBREPORT保存关于结构质量的报告并列出错误。HSSP对所有蛋白质进行多序列比对。PDBFINDER包含易于解析的PDB文件内容摘要，并添加了来自其他系统的基本信息。Pdb_redo保存通过X射线解析的所有结构的重新细化的副本，并且通常是经过改进的副本。为什么_NOT总结了无法生成某些文件的原因。所有这些系统每周都会更新。这些数据集可用于分析从结构基因组学到癌症生物学和蛋白质设计等领域的蛋白质结构特性。
The Protein Data Bank (PDB) is the world-wide repository of macromolecular structure information. We present a series of databases that run parallel to the PDB. Each database holds one entry, if possible, for each PDB entry. DSSP holds the secondary structure of the proteins. PDBREPORT holds reports on the structure quality and lists errors. HSSP holds a multiple sequence alignment for all proteins. The PDBFINDER holds easy to parse summaries of the PDB file content, augmented with essentials from the other systems. PDB_REDO holds re-refined, and often improved, copies of all structures solved by X-ray. WHY_NOT summarizes why certain files could not be produced. All these systems are updated weekly. The data sets can be used for the analysis of properties of protein structures in areas ranging from structural genomics, to cancer biology and protein design.