PROSEQ: A software for preparation and evolutionary analysis of DNA sequence data sets
PROSEQ: A software for preparation and evolutionary analysis of DNA sequence data sets
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DOI：
10.1046/j.1471-8286.2002.00313.x
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发表时间：
2002-12-01
期刊：
影响因子：
--
通讯作者：
Filatov, DA
中科院分区：
文献类型：
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作者：
Filatov, DA
PROSEQ是一个集成的用户友好的基于WINDOWS的程序，用于方便的序列编辑和进化分析。它的目的是简化准备和分析的DNA序列数据集的群体遗传学，系统发育和分子生态学研究。序列编辑器功能包括编辑色谱文件、重叠群组装、序列比对、翻译和其他实用程序。分析功能包括计算遗传多样性，分歧，人口细分和基因流与置换为基础的显着性检验和各种测试的中性。结合模拟工具实现了基因内重组，种群细分和种群增长的模型。
PROSEQ is an integrated user-friendly WINDOWS based program for convenient sequence editing and evolutionary analysis. It is designed to simplify preparation and analysis of DNA sequence data sets in population genetic, phylogenetic and molecular ecology studies. Sequence editor features include editing of chromatogram files, contig assembly, sequence alignment, translation and other utilities. Analysis features include calculation of genetic diversity, divergence, population subdivision and gene flow with permutation-based significance testing and various tests of neutrality. A tool for coalescent simulations implements models with intragenic recombination, population subdivision and population growth.