JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
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DOI：
10.1093/bioinformatics/btv341
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发表时间：
2015-10-15
期刊：
影响因子：
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通讯作者：
Dräger A
中科院分区：
文献类型：
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作者：
Rodriguez N;Thomas A;Watanabe L;Vazirabad IY;Kofia V;Gómez HF;Mittag F;Matthes J;Rudolph J;Wrzodek F;Netz E;Diamantikos A;Eichner J;Keller R;Wrzodek C;Fröhlich S;Lewis NE;Myers CJ;Le Novère N;Palsson BØ;Hucka M;Dräger A
摘要：JSBML是系统生物学标记语言（SBML）格式的官方纯Java编程库，随着系统生物学中不同建模形式化的出现以及它们通过SBML扩展进行交换和表示的能力而发展。JSBML已经成熟为一个主要的、活跃的开源项目，其贡献来自不断壮大的国际开发人员团队，他们不仅维护了与SBML的兼容性，而且还推动了对Java接口的稳步改进，并提高了对最终用户的易用性。可用性和实现：根据LGPL 2.1的条款，可以从http://sbml.org/Software/JSBML网站免费获得JSBML的源代码、二进制文件和文档。关于JSBML的更多信息可以在http://sbml.org/Software/JSBML/docs/的用户指南中找到。联系方式：jsbml-development@googlegroups.com或andraeger@eng.ucsd.edu补充信息：补充数据可在Bioinformatics在线获取。
Summary: JSBML, the official pure Java programming library for the Systems Biology Markup Language (SBML) format, has evolved with the advent of different modeling formalisms in systems biology and their ability to be exchanged and represented via extensions of SBML. JSBML has matured into a major, active open-source project with contributions from a growing, international team of developers who not only maintain compatibility with SBML, but also drive steady improvements to the Java interface and promote ease-of-use with end users. Availability and implementation: Source code, binaries and documentation for JSBML can be freely obtained under the terms of the LGPL 2.1 from the website http://sbml.org/Software/JSBML. More information about JSBML can be found in the user guide at http://sbml.org/Software/JSBML/docs/. Contact: jsbml-development@googlegroups.com or andraeger@eng.ucsd.edu Supplementary information: Supplementary data are available at Bioinformatics online.