compcodeR-an R package for benchmarking differential expression methods for RNA-seq data
compcodeR-an R package for benchmarking differential expression methods for RNA-seq data
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DOI：
10.1093/bioinformatics/btu324
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发表时间：
2014-09-01
期刊：
影响因子：
5.8
通讯作者：
Soneson, Charlotte
中科院分区：
文献类型：
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作者：
Soneson, Charlotte
compcodeR是一个R包，用于对差异表达分析方法进行基准测试，特别是用于分析RNA-seq数据的方法。该软件包提供了模拟真实RNA-seq计数数据集的功能，几种最常用的差异表达分析方法的接口，以及用于评估和比较真实的和模拟数据的不同方法的广泛功能。
compcodeR is an R package for benchmarking of differential expression analysis methods, in particular, methods developed for analyzing RNA-seq data. The package provides functionality for simulating realistic RNA-seq count datasets, an interface to several of the most commonly used differential expression analysis methods and extensive functionality for evaluating and comparing different approaches on real and simulated data.