Genomic Epidemiology of SARS-CoV-2 in Western Burkina Faso, West Africa.
Genomic Epidemiology of SARS-CoV-2 in Western Burkina Faso, West Africa.
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DOI:
10.3390/v14122788
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发表时间:
2022-12-14
期刊:
影响因子:
--
通讯作者:
Ouedraogo AS
中科院分区:
文献类型:
--
作者:
Sawadogo Y;Galal L;Belarbi E;Zongo A;Schubert G;Leendertz F;Kanteh A;Sesay AK;Erhart A;Bañuls AL;Tarnagda Z;Godreuil S;Tinto H;Ouedraogo AS
Background: After its initial detection in Wuhan, China, in December 2019, SARS-CoV-2 has spread rapidly, causing successive epidemic waves worldwide. This study aims to provide a genomic epidemiology of SARS-CoV-2 in Burkina Faso. Methods: Three hundred and seventy-seven SARS-CoV-2 genomes obtained from PCR-positive nasopharyngeal samples (PCR cycle threshold score < 35) collected between 5 May 2020, and 31 January 2022 were analyzed. Genomic sequences were assigned to phylogenetic clades using NextClade and to Pango lineages using pangolin. Phylogenetic and phylogeographic analyses were performed to determine the geographical sources and time of virus introduction in Burkina Faso. Results: The analyzed SARS-CoV-2 genomes can be assigned to 10 phylogenetic clades and 27 Pango lineages already described worldwide. Our analyses revealed the important role of cross-border human mobility in the successive SARS-CoV-2 introductions in Burkina Faso from neighboring countries. Conclusions: This study provides additional insights into the genomic epidemiology of SARS-CoV-2 in West Africa. It highlights the importance of land travel in the spread of the virus and the need to rapidly implement preventive policies. Regional cross-border collaborations and the adherence of the general population to government policies are key to prevent new epidemic waves.
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DOI:
10.1126/science.abj4336
发表时间:
2021-10-22
期刊:
Science (New York, N.Y.)
影响因子:
--
作者:
Wilkinson E;Giovanetti M;Tegally H;San JE;Lessells R;Cuadros D;Martin DP;Rasmussen DA;Zekri AN;Sangare AK;Ouedraogo AS;Sesay AK;Priscilla A;Kemi AS;Olubusuyi AM;Oluwapelumi AOO;Hammami A;Amuri AA;Sayed A;Ouma AEO;Elargoubi A;Ajayi NA;Victoria AF;Kazeem A;George A;Trotter AJ;Yahaya AA;Keita AK;Diallo A;Kone A;Souissi A;Chtourou A;Gutierrez AV;Page AJ;Vinze A;Iranzadeh A;Lambisia A;Ismail A;Rosemary A;Sylverken A;Femi A;Ibrahimi A;Marycelin B;Oderinde BS;Bolajoko B;Dhaala B;Herring BL;Njanpop-Lafourcade BM;Kleinhans B;McInnis B;Tegomoh B;Brook C;Pratt CB;Scheepers C;Akoua-Koffi CG;Agoti CN;Peyrefitte C;Daubenberger C;Morang'a CM;Nokes DJ;Amoako DG;Bugembe DL;Park D;Baker D;Doolabh D;Ssemwanga D;Tshiabuila D;Bassirou D;Amuzu DSY;Goedhals D;Omuoyo DO;Maruapula D;Foster-Nyarko E;Lusamaki EK;Simulundu E;Ong'era EM;Ngabana EN;Shumba E;El Fahime E;Lokilo E;Mukantwari E;Philomena E;Belarbi E;Simon-Loriere E;Anoh EA;Leendertz F;Ajili F;Enoch FO;Wasfi F;Abdelmoula F;Mosha FS;Takawira FT;Derrar F;Bouzid F;Onikepe F;Adeola F;Muyembe FM;Tanser F;Dratibi FA;Mbunsu GK;Thilliez G;Kay GL;Githinji G;van Zyl G;Awandare GA;Schubert G;Maphalala GP;Ranaivoson HC;Lemriss H;Anise H;Abe H;Karray HH;Nansumba H;Elgahzaly HA;Gumbo H;Smeti I;Ayed IB;Odia I;Ben Boubaker IB;Gaaloul I;Gazy I;Mudau I;Ssewanyana I;Konstantinus I;Lekana-Douk JB;Makangara JC;Tamfum JM;Heraud JM;Shaffer JG;Giandhari J;Li J;Yasuda J;Mends JQ;Kiconco J;Morobe JM;Gyapong JO;Okolie JC;Kayiwa JT;Edwards JA;Gyamfi J;Farah J;Nakaseegu J;Ngoi JM;Namulondo J;Andeko JC;Lutwama JJ;O'Grady J;Siddle K;Adeyemi KT;Tumedi KA;Said KM;Hae-Young K;Duedu KO;Belyamani L;Fki-Berrajah L;Singh L;Martins LO;Tyers L;Ramuth M;Mastouri M;Aouni M;El Hefnawi M;Matsheka MI;Kebabonye M;Diop M;Turki M;Paye M;Nyaga MM;Mareka M;Damaris MM;Mburu MW;Mpina M;Nwando M;Owusu M;Wiley MR;Youtchou MT;Ayekaba MO;Abouelhoda M;Seadawy MG;Khalifa MK;Sekhele M;Ouadghiri M;Diagne MM;Mwenda M;Allam M;Phan MVT;Abid N;Touil N;Rujeni N;Kharrat N;Ismael N;Dia N;Mabunda N;Hsiao NY;Silochi NB;Nsenga N;Gumede N;Mulder N;Ndodo N;Razanajatovo NH;Iguosadolo N;Judith O;Kingsley OC;Sylvanus O;Peter O;Femi O;Idowu O;Testimony O;Chukwuma OE;Ogah OE;Onwuamah CK;Cyril O;Faye O;Tomori O;Ondoa P;Combe P;Semanda P;Oluniyi PE;Arnaldo P;Quashie PK;Dussart P;Bester PA;Mbala PK;Ayivor-Djanie R;Njouom R;Phillips RO;Gorman R;Kingsley RA;Carr RAA;El Kabbaj S;Gargouri S;Masmoudi S;Sankhe S;Lawal SB;Kassim S;Trabelsi S;Metha S;Kammoun S;Lemriss S;Agwa SHA;Calvignac-Spencer S;Schaffner SF;Doumbia S;Mandanda SM;Aryeetey S;Ahmed SS;Elhamoumi S;Andriamandimby S;Tope S;Lekana-Douki S;Prosolek S;Ouangraoua S;Mundeke SA;Rudder S;Panji S;Pillay S;Engelbrecht S;Nabadda S;Behillil S;Budiaki SL;van der Werf S;Mashe T;Aanniz T;Mohale T;Le-Viet T;Schindler T;Anyaneji UJ;Chinedu U;Ramphal U;Jessica U;George U;Fonseca V;Enouf V;Gorova V;Roshdy WH;Ampofo WK;Preiser W;Choga WT;Bediako Y;Naidoo Y;Butera Y;de Laurent ZR;Sall AA;Rebai A;von Gottberg A;Kouriba B;Williamson C;Bridges DJ;Chikwe I;Bhiman JN;Mine M;Cotten M;Moyo S;Gaseitsiwe S;Saasa N;Sabeti PC;Kaleebu P;Tebeje YK;Tessema SK;Happi C;Nkengasong J;de Oliveira T
通讯作者:
de Oliveira T
影响因子:
11.8
作者:
Bugembe DL;Kayiwa J;Phan MVT;Tushabe P;Balinandi S;Dhaala B;Lexow J;Mwebesa H;Aceng J;Kyobe H;Ssemwanga D;Lutwama J;Kaleebu P;Cotten M
通讯作者:
Cotten M
DOI:
10.1016/j.scitotenv.2022.153171
发表时间:
2022-05-10
期刊:
The Science of the total environment
影响因子:
--
作者:
Ahmed W;Bivins A;Smith WJM;Metcalfe S;Stephens M;Jennison AV;Moore FAJ;Bourke J;Schlebusch S;McMahon J;Hewitson G;Nguyen S;Barcelon J;Jackson G;Mueller JF;Ehret J;Hosegood I;Tian W;Wang H;Yang L;Bertsch PM;Tynan J;Thomas KV;Bibby K;Graber TE;Ziels R;Simpson SL
通讯作者:
Simpson SL
DOI:
10.1126/science.abg3055
发表时间:
2021-04-09
期刊:
Science (New York, N.Y.)
影响因子:
--
作者:
Davies NG;Abbott S;Barnard RC;Jarvis CI;Kucharski AJ;Munday JD;Pearson CAB;Russell TW;Tully DC;Washburne AD;Wenseleers T;Gimma A;Waites W;Wong KLM;van Zandvoort K;Silverman JD;CMMID COVID-19 Working Group;COVID-19 Genomics UK (COG-UK) Consortium;Diaz-Ordaz K;Keogh R;Eggo RM;Funk S;Jit M;Atkins KE;Edmunds WJ
通讯作者:
Edmunds WJ
影响因子:
12.3
作者:
Jain M;Olsen HE;Paten B;Akeson M
通讯作者:
Akeson M