omniSpect: an open MATLAB-based tool for visualization and analysis of matrix-assisted laser desorption/ionization and desorption electrospray ionization mass spectrometry images.
omniSpect: an open MATLAB-based tool for visualization and analysis of matrix-assisted laser desorption/ionization and desorption electrospray ionization mass spectrometry images.
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DOI：
10.1007/s13361-012-0572-y
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发表时间：
2013-04
影响因子：
3.2
通讯作者：
Fernández FM
中科院分区：
文献类型：
--
作者：
Parry RM;Galhena AS;Gamage CM;Bennett RV;Wang MD;Fernández FM
我们提供Omnispect，这是一种开源网络和基于MATLAB的软件工具，用于解吸电喷雾电离（DESI）和矩阵辅助激光解吸电离电离（MALDI）质谱成像（MSI），可在远程服务器上执行计算功能。这些功能包括将数据从各种文件格式转换为一种在MATLAB中轻松操纵的通用格式，将时间序列质谱转换为基于探针空间栅格路径和多元分析的质谱图像。 Omnispect提供了一套可扩展的工具，以满足可视化开放和专有格式MSI数据所需的计算要求。
Omnispect是一种用于质谱成像实验的免费软件，可以在远程服务器或独立的GUI上运行各种技术的输入，并且是开源的。
We present omniSpect, an open source web- and Matlab-based software tool for both desorption electrospray ionization (DESI) and matrix-assisted laser desorption ionization (MALDI) mass spectrometry imaging (MSI) that performs computationally intensive functions on a remote server. These functions include converting data from a variety of file formats into a common format easily manipulated in MATLAB, transforming time-series mass spectra into mass spectrometry images based on a probe spatial raster path, and multivariate analysis. OmniSpect provides an extensible suite of tools to meet the computational requirements needed for visualizing open and proprietary format MSI data. OmniSpect is a freely-available software for mass spectrometry imaging experiments that accepts inputs from a variety of techniques such as DESI and MALDI, can be run on a remote server or as a standalone GUI, and is open source.