MarinegenomicsDB: An Integrated Genome Viewer for Community-based Annotation of Genomes
MarinegenomicsDB: An Integrated Genome Viewer for Community-based Annotation of Genomes
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DOI：
10.2108/zsj.30.797
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发表时间：
2013-10-01
影响因子：
0.9
通讯作者：
Kawashima, Takeshi
中科院分区：
文献类型：
--
作者：
Koyanagi, Ryo;Takeuchi, Takeshi;Kawashima, Takeshi
我们构建了一个基于网络的基因组注释平台MarinegenomicsDB，以整合各种海洋生物的基因组数据，包括珍珠牡蛎合浦珠母贝和珊瑚鹿角珊瑚。这个新开发的查看器应用程序提供了对已发表数据的开放访问和基于社区的手动基因注释的用户友好环境。在一个灵活的框架上进行开发，可以根据需要轻松扩展网站。到目前为止，已经有2000多个基因使用该系统进行了注释。未来，该网站将扩大到托管更广泛的数据，更多的物种和不同类型的全基因组分析。该网站的网址如下：http://marinegenomics.oist.jp。
We constructed a web-based genome annotation platform, MarinegenomicsDB, to integrate genome data from various marine organisms including the pearl oyster Pinctada fucata and the coral Acropora digitifera. This newly developed viewer application provides open access to published data and a user-friendly environment for community-based manual gene annotation. Development on a flexible framework enables easy expansion of the website on demand. To date, more than 2000 genes have been annotated using this system. In the future, the website will be expanded to host a wider variety of data, more species, and different types of genome-wide analyses. The website is available at the following URL: http://marinegenomics.oist.jp.