Assessing taxonomic metagenome profilers with OPAL
Assessing taxonomic metagenome profilers with OPAL
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DOI：
10.1186/s13059-019-1646-y
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发表时间：
2019-03-04
期刊：
影响因子：
12.3
通讯作者：
Koslicki, David
中科院分区：
文献类型：
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作者：
Meyer, Fernando;Bremges, Andreas;Koslicki, David
在过去的几年里，分类元基因组图谱方法的爆炸性增长产生了使用相关性能标准进行系统比较的需要。开放社区概况评估工具(OPAL)采用了常用的业绩指标，包括元基因组解释关键评估倡议(CAMI)的第一个挑战的指标，以及方便的可视化。此外，我们在CAMI和人类微生物组项目的数据集上与七个剖析器进行了深入的性能比较。Opal可在https://github.com/CAMI-challenge/OPAL.上免费获得
The explosive growth in taxonomic metagenome profiling methods over the past years has created a need for systematic comparisons using relevant performance criteria. The Open-community Profiling Assessment tooL (OPAL) implements commonly used performance metrics, including those of the first challenge of the initiative for the Critical Assessment of Metagenome Interpretation (CAMI), together with convenient visualizations. In addition, we perform in-depth performance comparisons with seven profilers on datasets of CAMI and the Human Microbiome Project. OPAL is freely available at https://github.com/CAMI-challenge/OPAL.