The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
复制标题
DOI：
10.1093/nar/gkaa939
复制
发表时间：
2021-01-08
影响因子：
14.9
通讯作者：
Kyrpides, Nikos C.
中科院分区：
文献类型：
--
作者：
Chen, I-Min A.;Chu, Ken;Kyrpides, Nikos C.
综合微生物基因组和微生物群系统(img/M：https：//img.jgi.doe.gov/m/)包含在能源部联合基因组研究所(JGI)测序的注解分离基因组和元基因组数据集，由外部用户提交，或从NCBI等公共来源导入。IMG v6.0包括高级搜索功能和一个新的工具，用于对混合的基因组和超基因组库进行统计分析。新的IMG网络用户界面也有一个新的帮助页面，其中包含额外的文档和网络研讨会教程，以帮助用户更好地了解如何使用各种IMG功能和工具进行研究。新的数据集已经用原核注释管道V.5进行了处理，其中包括扩展的蛋白质家族分配。
The Integrated Microbial Genomes & Microbiomes system (IMG/M: https:// img.jgi.doe.gov/m/) contains annotated isolate genome and metagenome datasets sequenced at the DOE's Joint Genome Institute (JGI), submitted by external users, or imported from public sources such as NCBI. IMG v 6.0 includes advanced search functions and a new tool for statistical analysis of mixed sets of genomes and metagenome bins. The new IMG web user interface also has a new Help page with additional documentation and webinar tutorials to help users better understand how to use various IMG functions and tools for their research. New datasets have been processed with the prokaryotic annotation pipeline v.5, which includes extended protein family assignments.