The Stanford Microarray Database
The Stanford Microarray Database
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DOI：
10.1093/nar/29.1.152
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发表时间：
2001-01-01
影响因子：
14.9
通讯作者：
Cherry, JM
中科院分区：
文献类型：
--
作者：
Sherlock, G;Hernandez-Boussard, T;Cherry, JM
斯坦福微阵列数据库 (SMD) 存储来自微阵列实验的原始数据和标准化数据，并为研究人员提供 Web 界面来检索、分析和可视化其数据。 SMD 的两个直接目标是作为斯坦福大学正在进行的研究的微阵列数据的存储站点，并促进该数据一旦发布或由研究人员发布后的公开传播。最重要的是微阵列数据与微阵列上沉积的 DNA（基因、克隆等）相关的生物数据的连接。 SMD 利用许多公共资源将表达信息与相关生物学联系起来，包括 SGD [Ball,C.A., Dolinski. K.，德怀特，S.S.，哈里斯，M.A.，伊塞尔-塔弗，L，卡萨尔斯基斯，A.，斯卡夫，C.R.，夏洛克，G.，宾克利，G.，金，H。等人。 (2000) 核酸研究，28, 77-80]，YPD 和 WormPD [Costanzo,M.C.、Hogan,J.D.、Cusick,M.E.、Davis,B.P.、Fancher,A.M.、Hodges,P.E.、Kondu,P.、Lengieza,C.、Lew-Smith,J.E.、tingner,C.等人。 (2000) 核酸研究，28, 73-76]，Unigene [Wheeler,D.L.、Chappey,C.、Lash,A.E.、Leipe,D.D.、Madden,T.L.、Schuler,G.D.、Tatusova,T.A.和拉普，B.A. (2000) 核酸研究, 28, (0-14], dbEST [Boguski,A I.S., Lowe,T.M. 和 Tolstoshev,C.M. (1993) Nature Genet., 4, 332-333] 和 SWISS-PROT [Bairoch,A. 和 Apweiler,R. (2000) 核酸研究, 28, 45-48]并且可以通过http://genome-www.stanford.edu/microarray 访问。
The Stanford Microarray Database (SMD) stores raw and normalized data from microarray experiments, and provides web interfaces for researchers to retrieve, analyze and visualize their data. The two immediate goals for SMD are to serve as a storage site for microarray data from ongoing research at Stanford University, and to facilitate the public dissemination of that data once published, or released by the researcher. Of paramount importance is the connection of microarray data with the biological data that pertains to the DNA deposited on the microarray (genes, clones etc.). SMD makes use of many public resources to connect expression information to the relevant biology, including SGD [Ball,C.A., Dolinski. K., Dwight,S.S., Harris,M.A., Issel-Tarver, L, Kasarskis,A., Scafe,C.R., Sherlock,G., Binkley,G., Jin,H. et al. (2000) Nucleic Acids Res., 28, 77-80], YPD and WormPD [Costanzo,M.C., Hogan,J.D., Cusick,M.E., Davis,B.P., Fancher,A.M., Hodges,P.E., Kondu,P., Lengieza,C., Lew-Smith,J.E., tingner,C. ef al. (2000) Nucleic Acids Res., 28, 73-76], Unigene [Wheeler,D.L., Chappey,C., Lash,A.E., Leipe,D.D., Madden,T.L., Schuler,G.D., Tatusova,T.A. and Rapp,B.A. (2000) Nucleic Acids Res., 28, (0-14], dbEST [Boguski,A I.S., Lowe,T.M. and Tolstoshev,C.M. (1993) Nature Genet., 4, 332-333] and SWISS-PROT [Bairoch,A. and Apweiler,R. (2000) Nucleic Acids Res., 28, 45-48] and can be accessed at http:// genome-www.stanford.edu/microarray.