ggseqlogo: a versatile R package for drawing sequence logos
ggseqlogo: a versatile R package for drawing sequence logos
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DOI：
10.1093/bioinformatics/btx469
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发表时间：
2017-11-15
期刊：
影响因子：
5.8
通讯作者：
Wagih, Omar
中科院分区：
文献类型：
--
作者：
Wagih, Omar
序列标志已成为研究基因组中潜在序列模式的重要可视化方法。尽管如此，仍然缺乏提供这种可视化所需的多功能性的软件包。ggseqlogo是一个基于ggplot2包的R包，旨在解决这个问题。ggseqlogo以高度可定制的方式提供可出版的DNA，RNA和蛋白质序列徽标的本地插图，其功能包括多徽标图，定性和定量配色方案，徽标注释以及与其他图的集成。该软件包使用直观，并无缝集成到R分析管道中。
Sequence logos have become a crucial visualization method for studying underlying sequence patterns in the genome. Despite this, there remains a scarcity of software packages that provide the versatility often required for such visualizations. ggseqlogo is an R package built on the ggplot2 package that aims to address this issue. ggseqlogo offers native illustration of publication-ready DNA, RNA and protein sequence logos in a highly customizable fashion with features including multi-logo plots, qualitative and quantitative colour schemes, annotation of logos and integration with other plots. The package is intuitive to use and seamlessly integrates into R analysis pipelines.