Bioinformatics Research and Development, First International Conference, BIRD 2007, Berlin, Germany, March 12-14, 2007, Proceedings
Bioinformatics Research and Development, First International Conference, BIRD 2007, Berlin, Germany, March 12-14, 2007, Proceedings
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生物信息学研究与开发，第一届国际会议，BIRD 2007，德国柏林，2007 年 3 月 12-14 日，会议记录
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发表时间：
2007
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通讯作者：
J. Rémy
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作者：
J. Rémy
微阵列与系统生物学I（网络）使用基因表达时间序列数据的基因调控网络的贝叶斯推断。使用Redundancy分析的生物网络推理。一种新的从时序微阵列数据中提取基因调控网络的图优化算法。第二部分：微阵列与系统生物学用循环主成分分析法分析周期现象通过多个EST序列的比较分析鉴定禾谷类作物和拟南芥中的冷诱导基因空间基因表达数据关联规则挖掘第3部分：医学，SNP，基因组学I.-使用贝叶斯MCMC方法从基因表达数据个体化预测生存时间分布。比较基于逻辑回归的方法用于识别SNP相互作用。间期细胞核三维染色质纤维有限点取样的随机分析第4部分：医学，SNPs，基因组学II.-用非参数二项分布检验筛选HIV-1蛋白酶/抑制剂对接的结构satDNA分析仪1.2作为卫星DNA家族进化分析的有价值的计算工具：重访酸模属Y-连锁卫星DNA序列。一种用于多个生物活性化合物聚类的软层次算法。第五节：系统生物学代谢网络中通量分布计算的新方法哺乳动物G1/S调控模块模型的逆分叉分析识别功能模块及其互连性的加权内聚性。通过并行聚集过程的基因网络对加性和显性遗传现象进行建模和模拟。第6节：序列分析I（编码）。基于二值图谱的蛋白质远程同源性检测用于监督分类的生物序列编码。位置特定评分矩阵的快速搜索算法。第七节：序列分析II.-一种用于黑猩猩基因组分割的马尔可夫方法用于不平衡蛋白质数据分类和远程同源性检测的合成蛋白质序列过采样方法。用于RNA序列分析的茎核。用隐马尔可夫模型预测结构决定的卷曲-卷曲域。第8节：蛋白质组学I.-蛋白质相互作用位点的补丁预测：在线服务器评分函数的验证。基因组序列中不同RNA茎环的统计推断。跨细胞类型和分辨率的3D图像中蛋白质亚细胞位置模式的解释。第9节：蛋白质组学II（测量）。二维凝胶电泳图像分析的贝叶斯推断SimShiftDB：基于化学位移的同源性建模。LC/ESI-MS质量信号注释。第10节：蛋白质组学III（结构）。- d维HP模型中的随机蛋白质折叠模拟通过精细二级结构预测增强蛋白质紊乱检测。加入Softassign和动态规划解决接触图重叠问题。第11节：数据库，Web和文本分析。多维核磁共振谱图相似性检索的文本检索方法评价基于本体的MEDLINE文献分类在生物信息学网络环境中整合TP 53人类基因的突变数据。生物序列数据的高效可扩展索引技术。
Session 1: Microarray and Systems Biology I (Networks).- Bayesian Inference of Gene Regulatory Networks Using Gene Expression Time Series Data.- Biological Network Inference Using Redundancy Analysis.- A Novel Graph Optimisation Algorithm for the Extraction of Gene Regulatory Networks from Temporal Microarray Data.- Session 2: Microarray and Systems Biology II.- Analysing Periodic Phenomena by Circular PCA.- Identification of Cold-Induced Genes in Cereal Crops and Arabidopsis Through Comparative Analysis of Multiple EST Sets.- Mining Spatial Gene Expression Data for Association Rules.- Session 3: Medical, SNPs, Genomics I.- Individualized Predictions of Survival Time Distributions from Gene Expression Data Using a Bayesian MCMC Approach.- Comparing Logic Regression Based Methods for Identifying SNP Interactions.- Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei.- Session 4: Medical, SNPs, Genomics II.- Structural Screening of HIV-1 Protease/Inhibitor Docking by Non-parametric Binomial Distribution Test.- satDNA Analyzer 1.2 as a Valuable Computing Tool for Evolutionary Analysis of Satellite-DNA Families: Revisiting Y-Linked Satellite-DNA Sequences of Rumex (Polygonaceae).- A Soft Hierarchical Algorithm for the Clustering of Multiple Bioactive Chemical Compounds.- Session 5: Systems Biology.- A Novel Method for Flux Distribution Computation in Metabolic Networks.- Inverse Bifurcation Analysis of a Model for the Mammalian G 1/S Regulatory Module.- Weighted Cohesiveness for Identification of Functional Modules and Their Interconnectivity.- Modelling and Simulation of the Genetic Phenomena of Additivity and Dominance via Gene Networks of Parallel Aggregation Processes.- Session 6: Sequence Analysis I (Coding).- Protein Remote Homology Detection Based on Binary Profiles.- Biological Sequences Encoding for Supervised Classification.- Fast Search Algorithms for Position Specific Scoring Matrices.- Session 7: Sequence Analysis II.- A Markovian Approach for the Segmentation of Chimpanzee Genome.- Synthetic Protein Sequence Oversampling Method for Classification and Remote Homology Detection in Imbalanced Protein Data.- Stem Kernels for RNA Sequence Analyses.- Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models.- Session 8: Proteomics I.- Patch Prediction of Protein Interaction Sites: Validation of a Scoring Function for an Online Server.- Statistical Inference on Distinct RNA Stem-Loops in Genomic Sequences.- Interpretation of Protein Subcellular Location Patterns in 3D Images Across Cell Types and Resolutions.- Session 9: Proteomics II (Measurements).- Bayesian Inference for 2D Gel Electrophoresis Image Analysis.- SimShiftDB: Chemical-Shift-Based Homology Modeling.- Annotation of LC/ESI-MS Mass Signals.- Session 10: Proteomics III (Structure).- Stochastic Protein Folding Simulation in the d-Dimensional HP-Model.- Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction.- Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem.- Session 11: Databases, Web and Text Analysis.- An Evaluation of Text Retrieval Methods for Similarity Search of Multi-dimensional NMR-Spectra.- Ontology-Based MEDLINE Document Classification.- Integrating Mutations Data of the TP53 Human Gene in the Bioinformatics Network Environment.- Efficient and Scalable Indexing Techniques for Biological Sequence Data.