The Medicago truncatula Genome: Genomic Data Availability
The Medicago truncatula Genome: Genomic Data Availability
复制标题
DOI：
10.1007/978-1-4939-8633-0_3
复制
发表时间：
2018-01-01
期刊：
影响因子：
--
通讯作者：
Dickstein, Rebecca
中科院分区：
文献类型：
--
作者：
Burks, David;Azad, Rajeev;Dickstein, Rebecca
蒺藜苜蓿于1990年作为豆科植物的典范出现，是第三大陆生植物家族.大多数豆科植物与土壤细菌共生形成固氮根瘤，因此是全球氮循环和可持续农业的重要贡献者。豆类和豆类产品是人类和动物蛋白质以及食用油和工业油的重要来源。自从M。在被选为豆科模式植物的同时，许多遗传、基因组和分子资源已经可用，包括两种广泛使用的基因型的参考质量基因组序列。基因组数据的可访问性对于许多不同类型的M.此外，还可用于作物和饲料豆类的研究。在这一章中，我们讨论的策略，以获得存档的M。蒺藜基因组数据最初存放在不再维护的定制数据库中，但现在可以在通用数据库中访问。我们还审查了目前主要的基因组数据库，具体到M。truncatula以及含有M.除了来自其他植物的数据之外，还包括蒺藜数据。
Medicago truncatula emerged in 1990 as a model for legumes, comprising the third largest land plant - family. Most legumes form symbiotic nitrogen-fixing root nodules with compatible soil bacteria and thus are -important contributors to the global nitrogen cycle and sustainable agriculture. Legumes and legume - products are important sources for human and animal protein as well as for edible and industrial oils. In the years since M. truncatula was chosen as a legume model, many genetic, genomic, and molecular resources have become available, including reference quality genome sequences for two widely used - genotypes. Accessibility of genomic data is important for many different types of studies with M. truncatula as well as for research - involving crop and forage legumes. In this chapter, we discuss strategies to obtain archived M. truncatula genomic data originally deposited into custom databases that are no longer maintained but are now accessible in general databases. We also review key current genomic databases that are specific to M. truncatula as well as those that contain M. truncatula data in addition to data from other plants.