BioMOBY: an open source biological web services proposal.

BioMOBY: an open source biological web services proposal.
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DOI:
10.1093/bib/3.4.331
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发表时间:
2002-12-01
影响因子:
9.5
通讯作者:
Links, Matthew
Links, Matthew
中科院分区:
生物学2区
文献类型:
--
作者:
Wilkinson, Mark D;Links, Matthew

文献摘要

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BioMOBY是一个开源研究项目,旨在通过Web服务生成一个用于发现和分发生物数据的架构;数据和服务是分散的,但这些资源的可用性以及与它们交互的指令都注册在一个名为MOBY Central的中心位置。BioMOBY通过具有对象和服务本体的对象驱动的注册表查询系统,增加了Web服务范例,如通用数据发现和集成(Universal Data Discovery and Integration,缩写为DBD)。这允许用户遍历扩展和不同的数据集,其中每个可能的下一步都基于当前手头的数据对象。此外,可以使用注册表自动发现从当前数据对象到期望的最终数据对象的路径。本机BioMOBY对象是轻量级XML,并组成简单对象访问协议(SOAP)事务的查询和响应。
BioMOBY is an Open Source research project which aims to generate an architecture for the discovery and distribution of biological data through web services; data and services are decentralised, but the availability of these resources, and the instructions for interacting with them, are registered in a central location called MOBY Central. BioMOBY adds to the web services paradigm, as exemplified by Universal Data Discovery and Integration (UDDI), by having an object-driven registry query system with object and service ontologies. This allows users to traverse expansive and disparate data sets where each possible next step is presented based on the data object currently in-hand. Moreover, a path from the current data object to a desired final data object could be automatically discovered using the registry. Native BioMOBY objects are lightweight XML, and make up both the query and the response of a simple object access protocol (SOAP) transaction.