Java Treeview-extensible visualization of microarray data
Java Treeview-extensible visualization of microarray data
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DOI：
10.1093/bioinformatics/bth349
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发表时间：
2004-11-22
期刊：
影响因子：
5.8
通讯作者：
Saldanha, AJ
中科院分区：
文献类型：
--
作者：
Saldanha, AJ
开源软件通过允许用户扩展现有应用程序的功能来鼓励创新。Treeview是一种流行的微阵列数据可视化应用程序，但它是封闭源代码和特定于平台的，这限制了其当前的实用性和作为进一步开发平台的适用性。Java Treeview是一个开源的、跨平台的重写工具，可以很好地处理非常大的数据集，并支持对文件格式的扩展，允许对额外分析的结果进行可视化和比较。通用文件格式和开放源代码的结合使Java Treeview成为解决一类可视化问题的有吸引力的选择。还提供了一个小程序版本，可以在任何网站上使用，无需特殊的服务器端设置。
Open source software encourages innovation by allowing users to extend the functionality of existing applications. Treeview is a popular application for the visualization of microarray data, but is closed-source and platform-specific, which limits both its current utility and suitability as a platform for further development. Java Treeview is an open-source, cross-platform rewrite that handles very large datasets well, and supports extensions to the file format that allow the results of additional analysis to be visualized and compared. The combination of a general file format and open source makes Java Treeview an attractive choice for solving a class of visualization problems. An applet version is also available that can be used on any website with no special server-side setup.