Supporting the SBML layout extension
Supporting the SBML layout extension
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DOI：
10.1093/bioinformatics/btl520
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发表时间：
2006-12-01
期刊：
影响因子：
5.8
通讯作者：
Sauro, Herbert M.
中科院分区：
文献类型：
--
作者：
Deckard, Anastasia;Bergmann, Frank T.;Sauro, Herbert M.
动机：研究大型或复杂生化网络的研究人员将受益于自动创建清晰可视化并以可移植和广泛接受的格式存储它们的能力。摘要：SBMLSupportLayout和SBWAutoLayout这两个模块支持读取、创建、操作和写入生化模型的布局信息。SBMLSupportLayout可以读取、更新、添加和渲染模型布局信息。SBWAutoLayout可以自动布局模型，以图形方式操作模型布局，并为没有布局信息的模型生成布局信息。
Motivation: Researchers studying large or complex biochemical networks would benefit from the ability to automatically create lucid visualizations and store them in a portable and widely accepted format.Summary: Two modules, SBMLSupportLayout and SBWAutoLayout, support reading, creating, manipulating and writing layout information for biochemical models. SBMLSupportLayout can read, update, add and render model layout information. SBWAutoLayout can automatically layout models, graphically manipulate model layout and generate layout information for models without layout information.