Development and characterization of 29 InDel markers from the Mangrove Kandelia obovata genome using a resequencing dataset
Development and characterization of 29 InDel markers from the Mangrove Kandelia obovata genome using a resequencing dataset
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DOI：
10.1007/s12686-022-01272-5
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发表时间：
2022-06-10
影响因子：
1.1
通讯作者：
Chen, Qiuxia
中科院分区：
文献类型：
--
作者：
Liu, Xing;Liu, Yu;Chen, Qiuxia
插入-缺失（InDel）标记在遗传学研究中被广泛应用。DNA测序技术的快速进步使得从非模式植物基因组中开发大量InDel标记变得更加高效和经济。在这项研究中，我们确定了29个多态性InDel标记用于保护遗传学使用秋茄基因组重测序数据集。PIC值为0.186 ~ 0.375，H-o和H-e值分别为0.118 ~ 0.471和0.208 ~ 0.500。据我们所知，这是迄今为止为K产生的最广泛的InDel标记集。obovata。这些标记对进一步研究K. obovata。
Insertion-deletion (InDel) markers are widely employed in genetic studies. The rapid advancement of DNA sequencing technology has enabled the development of a large number of InDel makers from the genomes of non-model plants to become more efficient and cost-effective. In this study, we identified 29 polymorphic InDel markers utilized in conservation genetics using the Kandelia obovata genome resequencing dataset. PIC values ranged from 0.186 to 0.375 while the values of H-o and H-e varied from 0.118 to 0.471 and from 0.208 to 0.500, respectively. To the best of our knowledge, this is by far the most extensive set of InDel markers generated for K. obovata. These markers might prove valuable to further the collective understanding of geographically distinct populations, evolutionary relationships, as well as the conservation genetics of K. obovata.