Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python.
Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python.
复制标题
DOI：
10.12688/f1000research.17548.2
复制
发表时间：
2019-01-01
期刊：
影响因子：
--
通讯作者：
Dessimoz, Christophe
中科院分区：
文献类型：
--
作者：
Kaleb, Klara;Vesztrocy, Alex Warwick;Dessimoz, Christophe
直向同源物矩阵（OMA）是一个完善的资源，以确定许多基因组中的直向同源物。在这里，我们介绍了其编程接口的两个最新添加，即REST API和用户友好的R和Python包，称为OmaDB。这些将进一步促进OMA数据融入计算脚本和管道。REST API可以在https://omabrowser.org/api上免费访问。R OmaDB包作为Bioconductor的一部分可在http：//bioconductor.org/packages/OmaDB/获得，而omadb Python包可从Python包索引（PyPI）获得，网址为https://pypi.org/project/omadb/。
The Orthologous Matrix (OMA) is a well-established resource to identify orthologs among many genomes. Here, we present two recent additions to its programmatic interface, namely a REST API, and user-friendly R and Python packages called OmaDB. These should further facilitate the incorporation of OMA data into computational scripts and pipelines. The REST API can be freely accessed at https://omabrowser.org/api. The R OmaDB package is available as part of Bioconductor at http://bioconductor.org/packages/OmaDB/, and the omadb Python package is available from the Python Package Index (PyPI) at https://pypi.org/project/omadb/.