RDP2: recombination detection and analysis from sequence alignments
RDP2: recombination detection and analysis from sequence alignments
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DOI：
10.1093/bioinformatics/bth490
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发表时间：
2005-01-15
期刊：
影响因子：
5.8
通讯作者：
Posada, D
中科院分区：
文献类型：
--
作者：
Martin, DP;Williamson, C;Posada, D
RDP 2是一个Windows 95/XP程序，使用10种已发表的重组检测方法，包括GENECONV、BOOTSCAN、MAXIMUM chi（2）、CHIMAERA和SISTER SCANNING，检查核苷酸序列比对并尝试识别重组序列和重组断点。该程序可以快速自动分析大型比对（多达300个序列，包含13000个位点），并通过不同的重组检测和树绘制方法进行交互式探索，管理和验证结果。
RDP2 is a Windows 95/XP program that examines nucleotide sequence alignments and attempts to identify recombinant sequences and recombination breakpoints using 10 published recombination detection methods, including GENECONV, BOOTSCAN, MAXIMUM chi(2), CHIMAERA and SISTER SCANNING. The program enables fast automated analysis of large alignments (up to 300 sequences containing 13 000 sites), and interactive exploration, management and verification of results with different recombination detection and tree drawing methods.