Complete mitochondrial genome of Capreolus pygargus (Cervidae: Capreolinae), a protected and threatened species in China.
Complete mitochondrial genome of Capreolus pygargus (Cervidae: Capreolinae), a protected and threatened species in China.
复制标题
中国受保护和受威胁物种小狍（鹿科：Capreolinae）线粒体全基因组
DOI：
10.1080/23802359.2019.1638842
复制
发表时间：
2019-07-13
期刊：
影响因子：
--
通讯作者：
Ren ZM
中科院分区：
文献类型：
--
作者：
Li T;Liang YK;Zhang JJ;Ren ZM
采用鸟枪法测定了中国东北地区东北梅花鹿（Capreoluspygargus）线粒体基因组的全序列。C. Pygargus全长16,353 bp，包含13个蛋白质编码基因（PCG）、22个tRNA基因、2个rRNA基因和一个控制区。该序列的A + T含量为63.4%，G + C含量为36.6%，碱基组成为33.4% A，23.2% C，13.4% G和30.0% T。除了Nd 4L具有GTG外，其余13个PCG均启动一个典型的ATN密码子。六个PCG以TAA密码子终止，而Cyt B、Atp 8和Nd 1分别以阿加、TAG和TA-终止。而Cox 3、Nd 2、Nd 3和Nd 4以单个T-终止。由13个PCG构建的Capreolinae亚科系统发育树表明Capreolus属的物种是一个单系群，与Hydropotes属的分支是姐妹群。
We sequenced the complete mitochondrial genome (mitogenome) of Siberian Roe Deer, Capreolus pygargus, in China by the shotgun genome-skimming methods. The mitogenome of C. pygargus is totally 16,353 bp in length and contains 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and a control region. The sequence has a higher A + T content of 63.4% than G + C 36.6% and with a base composition of 33.4% A, 23.2% C, 13.4% G, and 30.0% T. All of the 13 PCGs initiate a typical ATN codon except Nd4L with GTG. Six PCGs terminate with a TAA codon, while Cyt b, Atp8, and Nd1 terminate with AGA, TAG, and TA–, respectively. Whereas, Cox3, Nd2, Nd3, and Nd4 terminate with a single T-. The phylogenetic trees of the subfamily Capreolinae with 13 PCGs indicated that Capreolus species were well-supported as a monophyletic group, which is sister to the clade of Hydropotes with well-support.
影响因子：
1.7
作者：
Bankevich, Anton;Nurk, Sergey;Pevzner, Pavel A.
通讯作者：
Pevzner, Pavel A.
DOI：
10.1093/bioinformatics/btu033
发表时间：
2014-05-01
期刊：
Bioinformatics (Oxford, England)
影响因子：
--
作者：
Stamatakis A
通讯作者：
Stamatakis A
影响因子：
2.1
作者：
Matosiuk, M.;Sheremetyeva, I. N.;Borkowska, A.
通讯作者：
Borkowska, A.