IBS: an illustrator for the presentation and visualization of biological sequences.
IBS: an illustrator for the presentation and visualization of biological sequences.
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IBS：用于生物序列呈现和可视化的插画家
DOI：
10.1093/bioinformatics/btv362
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发表时间：
2015-10-15
期刊：
影响因子：
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通讯作者：
Ren J
中科院分区：
文献类型：
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作者：
Liu W;Xie Y;Ma J;Luo X;Nie P;Zuo Z;Lahrmann U;Zhao Q;Zheng Y;Zhao Y;Xue Y;Ren J
摘要：生物序列图对于可视化蛋白质或核苷酸序列中的各种功能元件至关重要，它能够总结和呈现现有信息，并为直观的新发现提供手段。在此，我们介绍一个名为生物序列绘图工具（IBS）的软件包，它可用于以方便、高效和精确的方式展示蛋白质或核苷酸序列的组织。IBS提供了多种选项，生物序列可在用户定义的模式下进行操作、重新着色或重新调整比例。此外，最终的展示图可直接导出为符合出版质量的图片。
可用性和实现：IBS的独立软件包是用JAVA实现的，在线服务是用HTML5和JavaScript实现的。独立软件包和在线服务均可在http://ibs.biocuckoo.org免费获取。
联系方式：renjian.sysu@gmail.com或xueyu@hust.edu.cn
补充信息：补充数据可在Bioinformatics在线获取。
Summary: Biological sequence diagrams are fundamental for visualizing various functional elements in protein or nucleotide sequences that enable a summarization and presentation of existing information as well as means of intuitive new discoveries. Here, we present a software package called illustrator of biological sequences (IBS) that can be used for representing the organization of either protein or nucleotide sequences in a convenient, efficient and precise manner. Multiple options are provided in IBS, and biological sequences can be manipulated, recolored or rescaled in a user-defined mode. Also, the final representational artwork can be directly exported into a publication-quality figure. Availability and implementation: The standalone package of IBS was implemented in JAVA, while the online service was implemented in HTML5 and JavaScript. Both the standalone package and online service are freely available at http://ibs.biocuckoo.org. Contact: renjian.sysu@gmail.com or xueyu@hust.edu.cn Supplementary information: Supplementary data are available at Bioinformatics online.