The MG-RAST metagenomics database and portal in 2015.
The MG-RAST metagenomics database and portal in 2015.
复制标题
DOI：
10.1093/nar/gkv1322
复制
发表时间：
2016-01-04
影响因子：
14.9
通讯作者：
Meyer F
中科院分区：
文献类型：
--
作者：
Wilke A;Bischof J;Gerlach W;Glass E;Harrison T;Keegan KP;Paczian T;Trimble WL;Bagchi S;Grama A;Chaterji S;Meyer F
MG-RAST(http://metagenomics.anl.gov)是一个开放提交的数据门户，用于处理、分析、共享和传播元基因组数据集。该系统目前拥有超过20万个数据集，并不断更新。在过去24个月中，提交的数量增加了4倍，现在平均每月4万亿次。除了几个新功能外，我们还报告了对分析工作流程的更改，以及用于将管道扩展到所需吞吐量级别的技术。为了展示MG-RAST数据的可能用途，我们提供了几个例子，将MG-RAST的数据和分析集成到流行的第三方分析工具或序列比对工具中。
MG-RAST (http://metagenomics.anl.gov) is an open-submission data portal for processing, analyzing, sharing and disseminating metagenomic datasets. The system currently hosts over 200 000 datasets and is continuously updated. The volume of submissions has increased 4-fold over the past 24 months, now averaging 4 terabasepairs per month. In addition to several new features, we report changes to the analysis workflow and the technologies used to scale the pipeline up to the required throughput levels. To show possible uses for the data from MG-RAST, we present several examples integrating data and analyses from MG-RAST into popular third-party analysis tools or sequence alignment tools.