Transcriptome analysis of woodland strawberry (Fragaria vesca) response to the infection by Strawberry vein banding virus (SVBV).
Transcriptome analysis of woodland strawberry (Fragaria vesca) response to the infection by Strawberry vein banding virus (SVBV).
复制标题
林地草莓（Fragaria vesca）对草莓脉带病毒（SVBV）感染反应的转录组分析
DOI：
10.1186/s12985-016-0584-5
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发表时间：
2016-07-13
期刊：
影响因子：
4.8
通讯作者：
Jiang T
中科院分区：
文献类型：
--
作者：
Chen J;Zhang H;Feng M;Zuo D;Hu Y;Jiang T
BackgroundWoodland strawberry (Fragaria vesca) infected with Strawberry vein banding virus (SVBV) exhibits chlorotic symptoms along the leaf veins. However, little is known about the molecular mechanism of strawberry disease caused by SVBV.MethodsWe performed the next-generation sequencing (RNA-Seq) study to identify gene expression changes induced by SVBV in woodland strawberry using mock-inoculated plants as a control.ResultsUsing RNA-Seq, we have identified 36,850 unigenes, of which 517 were differentially expressed in the virus-infected plants (DEGs). The unigenes were annotated and classified with Gene Ontology (GO), Clusters of Orthologous Group (COG) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. The KEGG pathway analysis of these genes suggested that strawberry disease caused by SVBV may affect multiple processes including pigment metabolism, photosynthesis and plant-pathogen interactions.ConclusionsOur research provides comprehensive transcriptome information regarding SVBV infection in strawberry.
