MedlineR: an open source library in R for Medline literature data mining
MedlineR: an open source library in R for Medline literature data mining
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DOI：
10.1093/bioinformatics/bth404
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发表时间：
2004-12-12
期刊：
影响因子：
5.8
通讯作者：
Shoemaker, J
中科院分区：
文献类型：
--
作者：
Lin, SM;McConnell, P;Shoemaker, J
我们描述了一个用 R 编程语言编写的用于 Medline 文献数据挖掘的开源库。该 MedlineR 库包含通过 NCBI PubMed 数据库查询 Medline 的程序；构造共现矩阵；并可视化查询项的网络拓扑。该库的开源特性允许用户使用 R 统计编程语言自由扩展它。为了展示其实用性，我们仅使用 10 行代码就构建了一个应用程序来分析术语关联。我们为生物信息学家和统计学家提供 MedlineR 作为图书馆基础，以构建更复杂的文献数据挖掘应用程序。
We describe an open source library written in the R programming language for Medline literature data mining. This MedlineR library includes programs to query Medline through the NCBI PubMed database; to construct the co-occurrence matrix; and to visualize the network topology of query terms. The open source nature of this library allows users to extend it freely in the statistical programming language of R. To demonstrate its utility, we have built an application to analyze term-association by using only 10 lines of code. We provide MedlineR as a library foundation for bioinformaticians and statisticians to build more sophisticated literature data mining applications.