Dynamite extended: two new services to simplify protein dynamic analysis
Dynamite extended: two new services to simplify protein dynamic analysis
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DOI：
10.1093/bioinformatics/bti464
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发表时间：
2005-07-15
期刊：
影响因子：
5.8
通讯作者：
Noble, MEM
中科院分区：
文献类型：
--
作者：
Barrett, CP;Noble, MEM
我们描述了两个额外的服务，现在可作为先前描述的Dynamite蛋白质动力学Web服务的一部分。Dynatraj为用户自己的蛋白质结构集合提供主成分分析和运动模式的可视化，例如。G.从分子动力学、核磁共振或实验合奏。Dynapocket从单一已知结构预测蛋白质口袋的可能构型。两者都是为了响应用户对Dynamite服务器附加功能的请求而提供的。像Dynamite一样，这两个软件都免费提供给所有用户。
We describe two additional services now available as part of the previously described Dynamite protein dynamics web service. Dynatraj provides principle component analysis and visualization of modes of motion for a user's own ensemble of protein structures, e. g. from Molecular Dynamics, NMR or experimental ensembles. Dynapocket predicts probable configurations of a protein pocket from a single known structure. Both have been provided in response to requests from users for additional functionality from the Dynamite server. Like Dynamite, both are available free of charge to all users.