A method for estimating nucleotide diversity from AFLP data.

A method for estimating nucleotide diversity from AFLP data.
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一种根据 AFLP 数据估计核苷酸多样性的方法。

DOI:
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发表时间:
1999
期刊:
影响因子:
3.3
通讯作者:
F. Tajima
F. Tajima
中科院分区:
生物学2区
文献类型:
--
作者:
H. Innan;R. Terauchi;G. Kahl;F. Tajima

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利用AFLP数据中核苷酸变异数与共有条带比例之间的关系,建立了一种估算AFLP数据核苷酸多样性的方法。估计方程基于GC含量为0.5的假设。然而,计算机模拟表明,即使GC含量偏离0.5,只要每个位点的核苷酸变化数(核苷酸多样性)很小,这种方法也能给出相当准确的估计。作为一个例子,野生山药,长叶薯蓣,核苷酸多样性进行了估计。估计的核苷酸多样性为0.0055,这是大于估计的Adh和Pgi的核苷酸序列数据。
A method for estimating the nucleotide diversity from AFLP data is developed by using the relationship between the number of nucleotide changes and the proportion of shared bands. The estimation equation is based on the assumption that GC-content is 0.5. Computer simulations, however, show that this method gives a reasonably accurate estimate even when GC-content deviates from 0.5, as long as the number of nucleotide changes per site (nucleotide diversity) is small. As an example, the nucleotide diversity of the wild yam, Dioscorea tokoro, was estimated. The estimated nucleotide diversity is 0.0055, which is larger than estimations from nucleotide sequence data for Adh and Pgi.
单探针多位点 DNA 指纹杂合性的估计。
DOI: 10.1093/oxfordjournals.molbev.a040755
发表时间: 1992
影响因子: 10.7
作者:
Stephens,JC;Gilbert,DA;Yuhki,N;O'Brien,SJ
通讯作者: O'Brien,SJ
DOI: --
发表时间: 1981
期刊: Genetics
影响因子: 3.3
作者:
M. Nei;F. Tajima
通讯作者: M. Nei;F. Tajima
用 RAPD 估计核苷酸分歧的前景。
DOI: 10.1093/oxfordjournals.molbev.a040057
发表时间: 1993
影响因子: 10.7
作者:
Clark,AG;Lanigan,CM
通讯作者: Lanigan,CM