dirHub: a trackHub configurator with directory structure projection
dirHub: a trackHub configurator with directory structure projection
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dirHub：具有目录结构投影的 trackHub 配置器
DOI：
10.1101/314807
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发表时间：
2018
期刊：
影响因子：
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通讯作者：
Hideya Kawaji
中科院分区：
文献类型：
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作者：
Inagaki;K.;Hirata;Y.;Hideya Kawaji
追踪数据中心是一种机制，使我们能够将基因组数据可视化为沿着基因组坐标的轨迹，并通过互联网共享它们，依赖于托管数据文件的网络服务器和提供图形表示的基因组浏览器。除了数据文件之外，它还需要一个可访问的配置文件来指定所有图形参数和轨道层次结构。这里开发dirHub是为了通过文件目录结构的投影来辅助生成配置文件，这使得主要通过文件操作来设置trackHub可视化成为可能。可用性和实现它是在ruby中实现的，源代码可以在https://github.com/hkawaji/dirHub/获得。它在 UCSC 基因组浏览器和 Hub Track 数据库定义 (v2) 上进行了测试。
Track Data Hub is a mechanism enabling us to visualize genomics data as tracks along genome coordinates and share them over the Internet, relying on a web server hosting data files and genome browsers offering graphical representations. It requires an accessible configuration file specifying all graphical parameters and track hierarchy, in addition to the data files. Here dirHub is developed to assist generation of the configuration file by projection of a file directory structure, which makes it possible to set up trackHub visualization mostly by file operations.Availability and implementationIt is implemented in ruby and the source code is available at https://github.com/hkawaji/dirHub/. It is tested on the UCSC Genome Browser and the Hub Track Database Definition (v2).