EBI metagenomics in 2016--an expanding and evolving resource for the analysis and archiving of metagenomic data.
EBI metagenomics in 2016--an expanding and evolving resource for the analysis and archiving of metagenomic data.
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DOI：
10.1093/nar/gkv1195
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发表时间：
2016-01-04
影响因子：
14.9
通讯作者：
Finn RD
中科院分区：
文献类型：
--
作者：
Mitchell A;Bucchini F;Cochrane G;Denise H;ten Hoopen P;Fraser M;Pesseat S;Potter S;Scheremetjew M;Sterk P;Finn RD
EBI宏基因组学（https：//www.ebi.ac.uk/metagenomics/）是一个免费的宏基因组学和元转录组学数据分析和存档中心。在过去的两年中，该资源经历了快速增长，处理的样品数量增加了五倍以上，因此代表了分析的鸟枪宏基因组的最大资源之一。在这里，我们报告了2016年的资源状况，并概述了新的发展。特别是，我们描述了更新的数据内容，一个完整的检修的分析管道，通过网站和开发一个新的基于网络的工具，以比较功能分析的序列运行内的研究简化数据演示。我们还强调了去年利用该资源进行分析的两个比较引人注目的项目：海洋学项目“海洋取样日”和“塔拉海洋”。
EBI metagenomics (https://www.ebi.ac.uk/metagenomics/) is a freely available hub for the analysis and archiving of metagenomic and metatranscriptomic data. Over the last 2 years, the resource has undergone rapid growth, with an increase of over five-fold in the number of processed samples and consequently represents one of the largest resources of analysed shotgun metagenomes. Here, we report the status of the resource in 2016 and give an overview of new developments. In particular, we describe updates to data content, a complete overhaul of the analysis pipeline, streamlining of data presentation via the website and the development of a new web based tool to compare functional analyses of sequence runs within a study. We also highlight two of the higher profile projects that have been analysed using the resource in the last year: the oceanographic projects Ocean Sampling Day and Tara Oceans.