SFAPS: An R package for structure/function analysis of protein sequences based on informational spectrum method
SFAPS: An R package for structure/function analysis of protein sequences based on informational spectrum method
复制标题
SFAPS：基于信息谱方法的蛋白质序列结构/功能分析的R包
DOI：
10.1016/j.ymeth.2014.08.004
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发表时间：
2014-10-01
期刊：
影响因子：
4.8
通讯作者：
Huang, De-Shuang
中科院分区：
文献类型：
--
作者：
Deng, Su-Ping;Huang, De-Shuang
基于信息谱方法，开发了用于蛋白质序列结构/功能分析的R软件包SFAPS。信息谱方法采用电子-离子相互作用势参数作为蛋白质序列的数值表示，通过对蛋白质序列进行离散傅立叶变换，得到特定蛋白质相互作用的特征频率。信息谱方法常用于分析蛋白质序列，因此我们开发了这个软件工具，它是作为一个附加包实现的免费提供和广泛使用的统计语言R。我们的软件包作为Linux、Unix和Microsoft Windows的开源代码分发。它在GNU通用公共许可证下发布。(C)2014爱思唯尔公司All rights reserved.
The R package SFAPS has been developed for structure/function analysis of protein sequences based on information spectrum method. The informational spectrum method employs the electron-ion interaction potential parameter as the numerical representation for the protein sequence, and obtains the characteristic frequency of a particular protein interaction after computing the Discrete Fourier Transform for protein sequences. The informational spectrum method is often used to analyze protein sequences, so we developed this software tool, which is implemented as an add-on package to the freely available and widely used statistical language R. Our package is distributed as open source code for Linux, Unix and Microsoft Windows. It is released under the GNU General Public License. (C) 2014 Elsevier Inc. All rights reserved.