MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ

MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ
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DOI:
10.1093/bioinformatics/btw413
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发表时间:
2016-11-15
期刊:
影响因子:
5.8
通讯作者:
Andrey, Philippe
Andrey, Philippe
中科院分区:
生物学3区
文献类型:
--
作者:
Legland, David;Arganda-Carreras, Ignacio;Andrey, Philippe

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动机:数学形态学(MM)为处理2D和3D图像提供了许多强大的运算符。然而,目前为流行的ImageJ/Fiji平台实现的大多数MM插件都仅限于处理2D图像。结果:MorphoLibJ库提供了大量基于MM的通用工具集,用于处理二进制和灰度级2D和3D图像,并集成到用户友好的插件中。我们说明如何MorphoLibJ可以促进植物组织的3D图像的开发。
Motivation: Mathematical morphology (MM) provides many powerful operators for processing 2D and 3D images. However, most MM plugins currently implemented for the popular ImageJ/Fiji platform are limited to the processing of 2D images.Results: The MorphoLibJ library proposes a large collection of generic tools based on MM to process binary and grey-level 2D and 3D images, integrated into user-friendly plugins. We illustrate how MorphoLibJ can facilitate the exploitation of 3D images of plant tissues.