ARB:: a software environment for sequence data
ARB:: a software environment for sequence data
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DOI：
10.1093/nar/gkh293
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发表时间：
2004-02-01
影响因子：
14.9
通讯作者：
Schleifer, KH
中科院分区：
文献类型：
--
作者：
Ludwig, W;Strunk, O;Schleifer, KH
ARB（来自拉丁阿伯，树木）项目大约在10年前启动。 ARB程序软件包包括各种直接交互的软件工具，用于序列数据库维护和分析，这些工具由常见的图形用户界面控制。尽管最初是为核糖体RNA数据设计的，但也可用于任何核和氨基酸序列数据。中央数据库包含经过处理（对齐的）主要结构数据。任何其他描述性数据都可以存储在分配给单个序列的数据库字段中，也可以通过本地或全球网络链接。在主窗口中可视化的系统发育树可用于数据访问和可视化。该软件包包括用于数据导入和导出，序列比对，初级和二级结构编辑，轮廓和过滤器计算，系统发育分析，特定杂交探针设计和评估以及其他组件的其他工具。目前，该软件包由全球众多工作组使用。
The ARB (from Latin arbor, tree) project was initiated almost 10 years ago. The ARB program package comprises a variety of directly interacting software tools for sequence database maintenance and analysis which are controlled by a common graphical user interface. Although it was initially designed for ribosomal RNA data, it can be used for any nucleic and amino acid sequence data as well. A central database contains processed (aligned) primary structure data. Any additional descriptive data can be stored in database fields assigned to the individual sequences or linked via local or worldwide networks. A phylogenetic tree visualized in the main window can be used for data access and visualization. The package comprises additional tools for data import and export, sequence alignment, primary and secondary structure editing, profile and filter calculation, phylogenetic analyses, specific hybridization probe design and evaluation and other components for data analysis. Currently, the package is used by numerous working groups worldwide.