GRIMP: a web- and grid-based tool for high-speed analysis of large-scale genome-wide association using imputed data.

GRIMP: a web- and grid-based tool for high-speed analysis of large-scale genome-wide association using imputed data.
复制标题

GRIMP:一种基于网络和网格的工具,用于使用估算数据对大规模全基因组关联进行高速分析。

DOI:
10.1093/bioinformatics/btp497
复制
发表时间:
2009-10-15
期刊:
影响因子:
5.8
通讯作者:
Rivadeneira, Fernando
Rivadeneira, Fernando
中科院分区:
生物学3区
文献类型:
--
作者:
Estrada, Karol;Abuseiris, Anis;Grosveld, Frank G.;Uitterlinden, Andre G.;Knoch, Tobias A.;Rivadeneira, Fernando

文献摘要

参考文献

被引文献

相似文献

总结:目前全基因组关联研究(GWAS)的快速增长与现在常见的计算昂贵的插补相结合,需要大型用户组在线访问高性能计算资源,能够快速有效地分析数以百万计的遗传标记,成千上万的个人。在这里,我们提出了一个基于Web的接口,称为GRIMP的可扩展超级计算网格基础设施上运行公开可用的遗传软件的超大型GWAS。这对于扩大GWAS,获得来自1000个基因组计划的全基因组序列数据以及未来的全人口努力至关重要。联系人:ta. taknoch.org; f. erasmusmc.nl
Summary: The current fast growth of genome-wide association studies (GWAS) combined with now common computationally expensive imputation requires the online access of large user groups to high-performance computing resources capable of analyzing rapidly and efficiently millions of genetic markers for ten thousands of individuals. Here, we present a web-based interface—called GRIMP—to run publicly available genetic software for extremely large GWAS on scalable super-computing grid infrastructures. This is of major importance for the enlargement of GWAS with the availability of whole-genome sequence data from the 1000 Genomes Project and for future whole-population efforts. Contact: ta.knoch@taknoch.org; f.rivadeneira@erasmusmc.nl
DOI: 10.1038/ng2088
发表时间: 2007-07-01
期刊: NATURE GENETICS
影响因子: 30.8
作者:
Marchini, Jonathan;Howie, Bryan;Donnelly, Peter
通讯作者: Donnelly, Peter
DOI: 10.1038/nature06258
发表时间: 2007-10-18
期刊: NATURE
影响因子: 64.8
作者:
Frazer, Kelly A.;Ballinger, Dennis G.;Cox, David R.;Hinds, David A.;Stuve, Laura L.;Gibbs, Richard A.;Belmont, John W.;Boudreau, Andrew;Hardenbol, Paul;Leal, Suzanne M.;Pasternak, Shiran;Wheeler, David A.;Willis, Thomas D.;Yu, Fuli;Yang, Huanming;Zeng, Changqing;Gao, Yang;Hu, Haoran;Hu, Weitao;Li, Chaohua;Lin, Wei;Liu, Siqi;Pan, Hao;Tang, Xiaoli;Wang, Jian;Wang, Wei;Yu, Jun;Zhang, Bo;Zhang, Qingrun;Zhao, Hongbin;Zhao, Hui;Zhou, Jun;Gabriel, Stacey B.;Barry, Rachel;Blumenstiel, Brendan;Camargo, Amy;Defelice, Matthew;Faggart, Maura;Goyette, Mary;Gupta, Supriya;Moore, Jamie;Nguyen, Huy;Onofrio, Robert C.;Parkin, Melissa;Roy, Jessica;Stahl, Erich;Winchester, Ellen;Ziaugra, Liuda;Altshuler, David;Shen, Yan;Yao, Zhijian;Huang, Wei;Chu, Xun;He, Yungang;Jin, Li;Liu, Yangfan;Shen, Yayun;Sun, Weiwei;Wang, Haifeng;Wang, Yi;Wang, Ying;Xiong, Xiaoyan;Xu, Liang;Waye, Mary M. Y.;Tsui, Stephen K. W.;Wong, J. Tze-Fei;Galver, Luana M.;Fan, Jian-Bing;Gunderson, Kevin;Murray, Sarah S.;Oliphant, Arnold R.;Chee, Mark S.;Montpetit, Alexandre;Chagnon, Fanny;Ferretti, Vincent;Leboeuf, Martin;Olivier, Jean-Franccois;Phillips, Michael S.;Roumy, Stephanie;Sallee, Clementine;Verner, Andrei;Hudson, Thomas J.;Kwok, Pui-Yan;Cai, Dongmei;Koboldt, Daniel C.;Miller, Raymond D.;Pawlikowska, Ludmila;Taillon-Miller, Patricia;Xiao, Ming;Tsui, Lap-Chee;Mak, William;Song, You Qiang;Tam, Paul K. H.;Nakamura, Yusuke;Kawaguchi, Takahisa;Kitamoto, Takuya;Morizono, Takashi;Nagashima, Atsushi;Ohnishi, Yozo;Sekine, Akihiro;Tanaka, Toshihiro;Tsunoda, Tatsuhiko;Deloukas, Panos;Bird, Christine P.;Delgado, Marcos;Dermitzakis, Emmanouil T.;Gwilliam, Rhian;Hunt, Sarah;Morrison, Jonathan;Powell, Don;Stranger, Barbara E.;Whittaker, Pamela;Bentley, David R.;Daly, Mark J.;de Bakker, Paul I. W.;Barrett, Jeff;Chretien, Yves R.;Maller, Julian;McCarroll, Steve;Patterson, Nick;Pe'er, Itsik;Price, Alkes;Purcell, Shaun;Richter, Daniel J.;Sabeti, Pardis;Saxena, Richa;Schaffner, Stephen F.;Sham, Pak C.;Varilly, Patrick;Altshuler, David;Stein, Lincoln D.;Krishnan, Lalitha;Smith, Albert Vernon;Tello-Ruiz, Marcela K.;Thorisson, Gudmundur A.;Chakravarti, Aravinda;Chen, Peter E.;Cutler, David J.;Kashuk, Carl S.;Lin, Shin;Abecasis, Goncalo R.;Guan, Weihua;Li, Yun;Munro, Heather M.;Qin, Zhaohui Steve;Thomas, Daryl J.;McVean, Gilean;Auton, Adam;Bottolo, Leonardo;Cardin, Niall;Eyheramendy, Susana;Freeman, Colin;Marchini, Jonathan;Myers, Simon;Spencer, Chris;Stephens, Matthew;Donnelly, Peter;Cardon, Lon R.;Clarke, Geraldine;Evans, David M.;Morris, Andrew P.;Weir, Bruce S.;Tsunoda, Tatsuhiko;Johnson, Todd A.;Mullikin, James C.;Sherry, Stephen T.;Feolo, Michael;Skol, Andrew
通讯作者: Skol, Andrew
DOI: 10.1161/circgenetics.108.829747
发表时间: 2009-02
期刊: Circulation. Cardiovascular genetics
影响因子: --
作者:
Psaty BM;O'Donnell CJ;Gudnason V;Lunetta KL;Folsom AR;Rotter JI;Uitterlinden AG;Harris TB;Witteman JC;Boerwinkle E;CHARGE Consortium
通讯作者: CHARGE Consortium
DOI: 10.1093/hmg/ddn288
发表时间: 2008-10-15
影响因子: 3.5
作者:
de Bakker, Paul I. W.;Ferreira, Manuel A. R.;Voight, Benjamin F.
通讯作者: Voight, Benjamin F.
DOI: 10.1007/s10654-007-9199-x
发表时间: 2007
影响因子: 13.6
作者:
Hofman, Albert;Breteler, Monique M. B.;van Duijn, Cornelia M.;Krestin, Gabriel P.;Pols, Huibert A.;Stricker, Bruno H. Ch.;Tiemeier, Henning;Uitterlinden, Andre G.;Vingerling, Johannes R.;Witteman, Jacqueline C. M.
通讯作者: Witteman, Jacqueline C. M.