genomation: a toolkit to summarize, annotate and visualize genomic intervals
genomation: a toolkit to summarize, annotate and visualize genomic intervals
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DOI：
10.1093/bioinformatics/btu775
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发表时间：
2015-04-01
期刊：
影响因子：
5.8
通讯作者：
Schuebeler, Dirk
中科院分区：
文献类型：
--
作者：
Akalin, Altuna;Franke, Vedran;Schuebeler, Dirk
摘要：生物学见解可以通过计算整合由不同类型的信息组成的基因组学数据集来获得。集成通常受到各种各样的现有文件格式的阻碍，这些文件格式通常包含类似的信息，并且必须使用复杂的工具才能实现所需的结果。我们已经构建了一个R包genomation，以加快从高通量数据中提取生物信息。该软件包适用于各种基因组间隔文件类型，并能够轻松总结和注释具有给定基因组注释的高通量数据集。
A Summary: Biological insights can be obtained through computational integration of genomics data sets consisting of diverse types of information. The integration is often hampered by a large variety of existing file formats, often containing similar information, and the necessity to use complicated tools to achieve the desired results. We have built an R package, genomation, to expedite the extraction of biological information from high throughput data. The package works with a variety of genomic interval file types and enables easy summarization and annotation of high throughput data sets with given genomic annotations.