The yeast proteome database (YPD): a model for the organization and presentation of genome-wide functional data
The yeast proteome database (YPD): a model for the organization and presentation of genome-wide functional data
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DOI：
10.1093/nar/27.1.69
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发表时间：
1999-01-01
影响因子：
14.9
通讯作者：
Garrels, JI
中科院分区：
文献类型：
--
作者：
Hodges, PE;McKee, AHZ;Garrels, JI
酵母蛋白质组数据库 (YPD) 是用于组织和呈现综合蛋白质信息的模型。基于对酿酒酵母科学文献的详细整理，YPD 包含来自对 8500 份研究出版物的回顾的 50,000 多条注释行，有关与 6100 种酵母蛋白相似的每一种的信息围绕方便的单页格式（酵母蛋白报告）进行构建，并以弹出窗口的形式提供其他信息。蛋白质分类方案今年进行了修订，定义了每种蛋白质的细胞作用、功能和途径，并在酵母蛋白质报告中添加了功能摘要。这些变化为用户提供了蛋白质功能及其在细胞生物学中的位置的简洁摘要，并且增强了 YPD 搜索功能的功能，添加了预先计算的序列比对，为比较基因组学提供了交叉点，第一个转录本分析数据已集成到 YPD 蛋白质报告中，为呈现全基因组功能数据提供了框架。酵母蛋白质组数据库可以通过以下网址访问：http://www.proteome.com/YPDhome.html。
The Yeast Proteome Database (YPD) is a model for the organization and presentation of comprehensive protein information. Based on the detailed curation of the scientific literature for the yeast Saccharomyces cerevisiae, YPD contains more than 50 000 annotations lines derived from the review of 8500 research publications, The information concerning each of the similar to 6100 yeast proteins is structured around a convenient one-page format, the Yeast Protein Report, with additional information provided as pop-up windows. Protein classification schema have been revised this year, defining each protein's cellular role, function and pathway, and adding a Functional Abstract to the Yeast Protein Report. These changes provide the user with a succinct summary of the protein's function and its place in the biology of the cell, and they enhance the power of YPD Search functions, Precalculated sequence alignments have been added, to provide a crossover point for comparative genomics, The first transcript profiling data has been integrated into the YPD Protein Reports, providing the framework for the presentation of genome-wide functional data. The Yeast Proteome Database can be accessed on the Web at http://www.proteome.com/YPDhome.html.