Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium.
Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium.
复制标题
塔拉莫斯属和分类单元的系统发育和命名法，该分类属属属植物属。
DOI：
10.3114/sim.2011.70.04
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发表时间：
2011-11-15
影响因子：
16.5
通讯作者：
Frisvad JC
中科院分区：
文献类型：
--
作者：
Samson RA;Yilmaz N;Houbraken J;Spierenburg H;Seifert KA;Peterson SW;Varga J;Frisvad JC
回顾了青霉亚属Biverticillium变态种的分类历史，以及支持它们与Talarmyces中分类的同形种关系的证据。根据ITS、SSU和/或LSU测序结果，进一步研究了木霉菌和双胞菌亚属RPB1(RNA聚合酶II最大亚基)基因的部分序列与木霉科其他属的亲缘关系。青霉菌和青霉菌亚属Biverticillium Sensu Pitt的大多数种都位于一个与青霉菌其他亚属物种相距较远的单系支系中。对于物种关系的详细系统发育分析，ITS区域(包括。5.8S nrDNA)对塔拉霉菌和相关的双轮轮虫变形种的模式菌株和/或代表菌株进行了测序。为所有模式菌株和许多补充培养物编制了Extrolite图谱。所有证据都支持我们的结论，即青霉亚属Biverticillium区别于青霉菌中的其他亚属，应与同一分支中的Talarmyces种在分类上统一。遵循命名优先和单名命名的概念，我们将所有被接受的青霉亚属Biverticillium种转移到Talarmyces。提供了对塔拉霉菌的扩展概念的全纯通用诊断，包括无性型和无性型特征。给出了被接受的塔拉霉菌名称和新合并的青霉菌名称的列表。具有生物技术和医学重要性的物种，如海洋假单胞菌和马尔尼菲假单胞菌，现在被结合在塔拉霉菌中。讨论了有待进一步分类研究的排除种和分类群。附录列出了其他的通用名称，通常被认为是青霉菌的同义词，在我们采用Talarmyces这个名称之前就被考虑过了。分类新种--尖顶塔拉霉菌Samson，Yilmaz&Frisvad，sp.11月新组合和新名称--尖顶梭菌Samson、Yilmaz、Frisvad&Seifert、Albobiverticillius(H.-M.Hsieh，Y.-M.Ju&S.-Y.Hsieh)Samson、Yilmaz、Frisvad&Seifert、T.allahabadens(B.S.Mehrotra&D.Kumar)Samson、Yilmaz&Frisvad、T.aurantiacus(J.H.Mill，Gidden&A.Foster)Samson、Yilmaz&Frisvad&Frisvad、T.boninensis(Yaguchi&Udagawa)Samson、Yilmaz&Frisvad&Frisvad、T.allahabadus(Udagawa)Samson、Yilmaz&Frisvad&A.A.Foster)Samson、Yilmaz&Frisvad&A.A.Foster)Samson、Yilmaz&Frisvad&Frisvad、T.boninensis(Yaguchi&Udagawa)Samson、Yilmaz、&Frisvad、T.brunneus(Udagawa)Samson、Yilmaz&Frisvad&A.Foster)Samson、Yilmaz&Frisvad&A.Foster)Samson、Yilmaz&Frisvad&Frisvad、T.boninensis(Yaguchi&Udagawa)Samson、Yilmaz&Frisvad&Frisvad、T.Cecidicola(Seifert，Hoekstra&Frisvad)Samson，Yilmaz，Frisvad，T.coalescens(Quintan.)Samson、Yilmaz&Frisvad、树突毛虫T.Dendriticus(Pitt)Samson、Yilmaz、Frisvad&Seifert、Diversus(Raper&Fennell)Samson、Yilmaz&Frisvad、T.duclaxii(Delacr.)Samson，Yilmaz，Frisvad&Seifert，T.echinosporus(Nehira)Samson，Yilmaz&Frisvad，Comb.11月红血栓分枝杆菌Samson、Yilmaz、Frisvad&Seifert、T.funrulosus(Thom)Samson、Yilmaz、Frisvad&Seifert、T.islandicus(Sopp)Samson、Yilmaz、Frisvad&Seifert、T.loliensis(Pitt)Samson、Yilmaz、Frisvad&Fert、T.marneffei(Segreat、Capponi&Sureau)Samson、Yilmaz、Frisvad&Seifert、T.mini Samson、Yilmaz、Frisvad&Seifert、T.palmae(Samson、Stolk&Frisvad)Samson、Yilmaz、Frisvad&Sfert、T.panamffus(Samson、Stolk&Frisvad Samson)、Yilmaz、Frisvad&SporfertSomeya&Udagawa)Samson&Houbraken Phialosporus(Udagawa)Samson，Yilmaz&Frisvad，T.piceus(Raper&Fennell)Samson，Yilmaz，Frisvad&Seifert，T.pinophilus(Hedgcock)Samson，Yilmaz，Frisvad&Seifert，T.Pittii(Quintan.)Samson，Yilmaz，Frisvad&Seifert，T.primulinus(Pitt)Samson，Yilmaz&Frisvad，T.Proteolyticus(Kamyschko)Samson，Yilmaz&Frisvad，T.puostromaticus(Hodges，G.M.Warner，Rogerson)Samson，Yilmaz，Frisvad&Seifert，T.Purpurogenus(Stoll)Samson，Yilmaz，Frisvad&Seifert，T.rademirici(Quintan.)Samson，Yilmaz&Frisvad&A.A.Foster)Samson，Yilmaz，Frisvad&Seifert，T.ruulosus(Visagie&K.Jacobs)Samson，Yilmaz，Frisvad&Seifert，T.siamensis(Manoch&C.Ramírez)Samson，Yilmaz，Fidens&A.A.Foster)Samson，Yilmaz，Frisvad&Seifert，T.ruguosus(Thom)Samson，Yilmaz，Frisvad&Seifert，T.sumulosus(T&A.D.Hocking)Samson，Yilmaz&Frisvad，T.siamensis(Manoch&C.Ramírez)Samson，Yilmaz&Frisvad&A.A.Foster，T.ruguosus(Thom)Samson，Yilmaz，Frisvad&Seifert，T.sumulosus(T&A.D.Hocking)Samson，Yilmaz&Frisvad&Frisvad，T.siamsis(Manoch&C.Ramíz)Samson，Yilmaz&Frisvad&A.A.FosterYilmaz&Frisvad、变色毛壳菌T.aribilis(Sopp)Samson、Yilmaz、Frisvad&Seifert、变色毛壳菌T.varans(G.Sm.)Samson，Yilmaz&Frisvad，T.verruculosus(Peyronel)Samson，Yilmaz，Frisvad&Seifert，T.viridulus Samson，Yilmaz&Frisvad。
The taxonomic history of anamorphic species attributed to Penicillium subgenus Biverticillium is reviewed, along with evidence supporting their relationship with teleomorphic species classified in Talaromyces. To supplement previous conclusions based on ITS, SSU and/or LSU sequencing that Talaromyces and subgenus Biverticillium comprise a monophyletic group that is distinct from Penicillium at the generic level, the phylogenetic relationships of these two groups with other genera of Trichocomaceae was further studied by sequencing a part of the RPB1 (RNA polymerase II largest subunit) gene. Talaromyces species and most species of Penicillium subgenus Biverticillium sensu Pitt reside in a monophyletic clade distant from species of other subgenera of Penicillium. For detailed phylogenetic analysis of species relationships, the ITS region (incl. 5.8S nrDNA) was sequenced for the available type strains and/or representative isolates of Talaromyces and related biverticillate anamorphic species. Extrolite profiles were compiled for all type strains and many supplementary cultures. All evidence supports our conclusions that Penicillium subgenus Biverticillium is distinct from other subgenera in Penicillium and should be taxonomically unified with the Talaromyces species that reside in the same clade. Following the concepts of nomenclatural priority and single name nomenclature, we transfer all accepted species of Penicillium subgenus Biverticillium to Talaromyces. A holomorphic generic diagnosis for the expanded concept of Talaromyces, including teleomorph and anamorph characters, is provided. A list of accepted Talaromyces names and newly combined Penicillium names is given. Species of biotechnological and medical importance, such as P. funiculosum and P. marneffei, are now combined in Talaromyces. Excluded species and taxa that need further taxonomic study are discussed. An appendix lists other generic names, usually considered synonyms of Penicillium sensu lato that were considered prior to our adoption of the name Talaromyces. Taxonomic novelties: New species – Talaromyces apiculatus Samson, Yilmaz & Frisvad, sp. nov. New combinations and names – Talaromyces aculeatus (Raper & Fennell) Samson, Yilmaz, Frisvad & Seifert, T. albobiverticillius (H.-M. Hsieh, Y.-M. Ju & S.-Y. Hsieh) Samson, Yilmaz, Frisvad & Seifert, T. allahabadensis (B.S. Mehrotra & D. Kumar) Samson, Yilmaz & Frisvad, T. aurantiacus (J.H. Mill., Giddens & A.A. Foster) Samson, Yilmaz, & Frisvad, T. boninensis (Yaguchi & Udagawa) Samson, Yilmaz, & Frisvad, T. brunneus (Udagawa) Samson, Yilmaz & Frisvad, T. calidicanius (J.L. Chen) Samson, Yilmaz & Frisvad, T. cecidicola (Seifert, Hoekstra & Frisvad) Samson, Yilmaz, Frisvad & Seifert, T. coalescens (Quintan.) Samson, Yilmaz & Frisvad, T. dendriticus (Pitt) Samson, Yilmaz, Frisvad & Seifert, T. diversus (Raper & Fennell) Samson, Yilmaz & Frisvad, T. duclauxii (Delacr.) Samson, Yilmaz, Frisvad & Seifert, T. echinosporus (Nehira) Samson, Yilmaz & Frisvad, comb. nov. T. erythromellis (A.D. Hocking) Samson, Yilmaz, Frisvad & Seifert, T. funiculosus (Thom) Samson, Yilmaz, Frisvad & Seifert, T. islandicus (Sopp) Samson, Yilmaz, Frisvad & Seifert, T. loliensis (Pitt) Samson, Yilmaz & Frisvad, T. marneffei (Segretain, Capponi & Sureau) Samson, Yilmaz, Frisvad & Seifert, T. minioluteus (Dierckx) Samson, Yilmaz, Frisvad & Seifert, T. palmae (Samson, Stolk & Frisvad) Samson, Yilmaz, Frisvad & Seifert, T. panamensis (Samson, Stolk & Frisvad) Samson, Yilmaz, Frisvad & Seifert, T. paucisporus (Yaguchi, Someya & Udagawa) Samson & Houbraken T. phialosporus (Udagawa) Samson, Yilmaz & Frisvad, T. piceus (Raper & Fennell) Samson, Yilmaz, Frisvad & Seifert, T. pinophilus (Hedgcock) Samson, Yilmaz, Frisvad & Seifert, T. pittii (Quintan.) Samson, Yilmaz, Frisvad & Seifert, T. primulinus (Pitt) Samson, Yilmaz & Frisvad, T. proteolyticus (Kamyschko) Samson, Yilmaz & Frisvad, T. pseudostromaticus (Hodges, G.M. Warner, Rogerson) Samson, Yilmaz, Frisvad & Seifert, T. purpurogenus (Stoll) Samson, Yilmaz, Frisvad & Seifert, T. rademirici (Quintan.) Samson, Yilmaz & Frisvad, T. radicus (A.D. Hocking & Whitelaw) Samson, Yilmaz, Frisvad & Seifert, T. ramulosus (Visagie & K. Jacobs) Samson, Yilmaz, Frisvad & Seifert, T. rubicundus (J.H. Mill., Giddens & A.A. Foster) Samson, Yilmaz, Frisvad & Seifert, T. rugulosus (Thom) Samson, Yilmaz, Frisvad & Seifert, T. sabulosus (Pitt & A.D. Hocking) Samson, Yilmaz & Frisvad, T. siamensis (Manoch & C. Ramírez) Samson, Yilmaz & Frisvad, T. sublevisporus (Yaguchi & Udagawa) Samson, Yilmaz & Frisvad, T. variabilis (Sopp) Samson, Yilmaz, Frisvad & Seifert, T. varians (G. Sm.) Samson, Yilmaz & Frisvad, T. verruculosus (Peyronel) Samson, Yilmaz, Frisvad & Seifert, T. viridulus Samson, Yilmaz & Frisvad.