Jalview Version 2-a multiple sequence alignment editor and analysis workbench

Jalview Version 2-a multiple sequence alignment editor and analysis workbench
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DOI:
10.1093/bioinformatics/btp033
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发表时间:
2009-05-01
期刊:
影响因子:
5.8
通讯作者:
Barton, Geoffrey J.
Barton, Geoffrey J.
中科院分区:
生物学3区
文献类型:
--
作者:
Waterhouse, Andrew M.;Procter, James B.;Barton, Geoffrey J.

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Jalview Version 2是一个交互式的所见即所得编辑、分析和注释多个序列对齐的系统。核心功能包括基于键盘和鼠标的编辑,多视图和对齐概述,以及Jmol的链接结构显示。Jalview 2有两种形式:一种是用于web应用程序的轻量级Java applet,另一种是功能强大的桌面应用程序,它使用web服务进行序列对齐、二级结构预测以及从公共数据库和任何符合DAS 1.53的序列或注释服务器检索序列、序列、注释和结构。
Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server.