graph2tab, a library to convert experimental workflow graphs into tabular formats
graph2tab, a library to convert experimental workflow graphs into tabular formats
复制标题
DOI：
10.1093/bioinformatics/bts258
复制
发表时间：
2012-06-15
期刊：
影响因子：
5.8
通讯作者：
Rocca-Serra, Philippe
中科院分区：
文献类型：
--
作者：
Brandizi, Marco;Kurbatova, Natalja;Rocca-Serra, Philippe
动机：作为实验报告的一种手段，类似于活页纸的表格格式在生物医学领域越来越受欢迎。将实验工作流的图形转换成基于表格的表示的问题发生在许多这样的格式，是不容易解决的。结果：我们描述的graph2tab，一个库，实现方法来实现这样的转换在一个大小优化的方式。我们的解决方案是通用的，可以适应需要实施的数据导出器或数据转换器的特定情况。
Motivations: Spreadsheet-like tabular formats are ever more popular in the biomedical field as a mean for experimental reporting. The problem of converting the graph of an experimental workflow into a table-based representation occurs in many such formats and is not easy to solve.Results: We describe graph2tab, a library that implements methods to realise such a conversion in a size-optimised way. Our solution is generic and can be adapted to specific cases of data exporters or data converters that need to be implemented.