BioMagResBank.

BioMagResBank.
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DOI:
10.1093/nar/gkm957
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发表时间:
2008-01
影响因子:
14.9
通讯作者:
Markley JL
Markley JL
中科院分区:
生物学2区
文献类型:
--
作者:
Ulrich EL;Akutsu H;Doreleijers JF;Harano Y;Ioannidis YE;Lin J;Livny M;Mading S;Maziuk D;Miller Z;Nakatani E;Schulte CF;Tolmie DE;Kent Wenger R;Yao H;Markley JL

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BioMagResBank(BMRB:www.bmrb.wisc.edu)是从生物分子的核磁共振(NMR)光谱研究中收集的实验和衍生数据的存储库。BMRB是全球蛋白质数据库(wwPDB)的合作伙伴。(i)蛋白质、肽、核酸、碳水化合物和配体或辅因子的定量NMR光谱参数(指定的化学位移、耦合常数和峰列表)和衍生数据(弛豫参数、残余偶极耦合、氢交换速率、pKa值等),(ii)数据库的NMR限制处理从原作者沉积可从蛋白质数据库,(iii)时域(原始)光谱数据从NMR实验用于分配光谱共振,并确定生物大分子的结构和(iv)一个数据库的一维和二维1H和13 C一维和二维NMR光谱超过250代谢物。BMRB网站免费提供所有这些数据。BMRB有查询存档和检索信息的工具,还有一个FTP站点(ftp.bmrb.wisc.edu),在那里可以批量下载存档中的数据。存在两个BMRB镜像位点:一个在PDBj,蛋白质研究所,大坂大学,大坂,日本(bmrb.protein.osaka-u.ac.jp),另一个在CERM,佛罗伦萨大学,佛罗伦萨,意大利(bmrb.postgenomicnmr.net/)。大坂的研究中心还接受和处理数据证词。
The BioMagResBank (BMRB: www.bmrb.wisc.edu) is a repository for experimental and derived data gathered from nuclear magnetic resonance (NMR) spectroscopic studies of biological molecules. BMRB is a partner in the Worldwide Protein Data Bank (wwPDB). The BMRB archive consists of four main data depositories: (i) quantitative NMR spectral parameters for proteins, peptides, nucleic acids, carbohydrates and ligands or cofactors (assigned chemical shifts, coupling constants and peak lists) and derived data (relaxation parameters, residual dipolar couplings, hydrogen exchange rates, pKa values, etc.), (ii) databases for NMR restraints processed from original author depositions available from the Protein Data Bank, (iii) time-domain (raw) spectral data from NMR experiments used to assign spectral resonances and determine the structures of biological macromolecules and (iv) a database of one- and two-dimensional 1H and 13C one- and two-dimensional NMR spectra for over 250 metabolites. The BMRB website provides free access to all of these data. BMRB has tools for querying the archive and retrieving information and an ftp site (ftp.bmrb.wisc.edu) where data in the archive can be downloaded in bulk. Two BMRB mirror sites exist: one at the PDBj, Protein Research Institute, Osaka University, Osaka, Japan (bmrb.protein.osaka-u.ac.jp) and the other at CERM, University of Florence, Florence, Italy (bmrb.postgenomicnmr.net/). The site at Osaka also accepts and processes data depositions.
DOI: 10.1074/jbc.m409422200
发表时间: 2004-11-05
影响因子: 4.8
作者:
Lytle, BL;Peterson, FC;Volkman, BF
通讯作者: Volkman, BF
DOI: 10.1007/bf00202037
发表时间: 1996-05-01
影响因子: 2.7
作者:
Bartels, C;Billeter, M;Wuthrich, K
通讯作者: Wuthrich, K
DOI: 10.1007/bf01875516
发表时间: 1991-01-01
影响因子: 2.7
作者:
SEAVEY B R;FARR E A;MARKLEY J L
通讯作者: MARKLEY J L
DOI: 10.1351/pac199870010117
发表时间: 1998-01-01
影响因子: 1.8
作者:
Markley, JL;Bax, A;Wuthrich, K
通讯作者: Wuthrich, K
DOI: 10.1021/ci00019a005
发表时间: 1994-05-01
期刊: JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES
影响因子: --
作者:
HALL, SR;SPADACCINI, N
通讯作者: SPADACCINI, N