mzML--a community standard for mass spectrometry data.
mzML--a community standard for mass spectrometry data.
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DOI：
10.1074/mcp.r110.000133
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发表时间：
2011-01
期刊：
影响因子：
--
通讯作者：
Deutsch EW
中科院分区：
文献类型：
--
作者：
Martens L;Chambers M;Sturm M;Kessner D;Levander F;Shofstahl J;Tang WH;Römpp A;Neumann S;Pizarro AD;Montecchi-Palazzi L;Tasman N;Coleman M;Reisinger F;Souda P;Hermjakob H;Binz PA;Deutsch EW
质谱学是生命科学中发现和分析的基本工具。随着质谱学技术和方法的快速发展，为质谱学数据提供一种标准的输出格式以便于数据共享和分析已成为当务之急。最初，为质谱学数据开发标准格式的努力导致了多种格式，每种格式的设计都有不同的基本理念。为了解决与多种格式相关的问题，供应商、研究人员和软件开发人员在HuPo PSI的旗帜下召集起来开发单一标准。新的数据格式结合了以前数据格式的许多可取的技术属性，同时增加了一些改进，包括具有验证工具的受控词汇等功能，以确保格式的一致使用，改进了对选定反应监测数据的支持，以及立即可用的实施，以促进社区的快速采用。由此产生的标准数据格式mzML是一种经过充分测试的质谱计输出文件的开源格式，社区可以很容易地使用该格式，并很容易适应质谱学技术的不断进步。
Mass spectrometry is a fundamental tool for discovery and analysis in the life sciences. With the rapid advances in mass spectrometry technology and methods, it has become imperative to provide a standard output format for mass spectrometry data that will facilitate data sharing and analysis. Initially, the efforts to develop a standard format for mass spectrometry data resulted in multiple formats, each designed with a different underlying philosophy. To resolve the issues associated with having multiple formats, vendors, researchers, and software developers convened under the banner of the HUPO PSI to develop a single standard. The new data format incorporated many of the desirable technical attributes from the previous data formats, while adding a number of improvements, including features such as a controlled vocabulary with validation tools to ensure consistent usage of the format, improved support for selected reaction monitoring data, and immediately available implementations to facilitate rapid adoption by the community. The resulting standard data format, mzML, is a well tested open-source format for mass spectrometer output files that can be readily utilized by the community and easily adapted for incremental advances in mass spectrometry technology.