Repbase update, a database of eukaryotic repetitive elements

Repbase update, a database of eukaryotic repetitive elements
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DOI:
10.1159/000084979
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发表时间:
2005-01-01
影响因子:
1.7
通讯作者:
Walichiewicz, J
Walichiewicz, J
中科院分区:
生物学4区
文献类型:
--
作者:
Jurka, J;Kapitonov, VV;Walichiewicz, J

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Repbase Update是一个来自不同真核生物的重复元件的综合数据库。目前,它包含超过3600个注释序列,代表不同的重复序列家族和亚家族,其中许多在其他任何地方都没有报道。每个序列都附有简短的描述和对原始贡献者的引用。Repbase更新包括Repbase报告,一个电子杂志出版新发现的转座因子,和转座子出版,一个基于网络的浏览器选择转座因子的染色体图谱。来自Repbase Update的序列用于使用Censor和RepeatMasker等程序筛选和注释重复元件。Repbase更新可在全球网站http://www.girinst.org/Repbase_Update.html上获得。版权所有(c)2005 S. Karger AG,巴塞尔。
Repbase Update is a comprehensive database of repetitive elements from diverse eukaryotic organisms. Currently, it contains over 3600 annotated sequences representing different families and subfamilies of repeats, many of which are unreported anywhere else. Each sequence is accompanied by a short description and references to the original contributors. Repbase Update includes Repbase Reports, an electronic journal publishing newly discovered transposable elements, and the Transposon Pub, a web-based browser of selected chromosomal maps of transposable elements. Sequences from Repbase Update are used to screen and annotate repetitive elements using programs such as Censor and RepeatMasker. Repbase Update is available on the worldwide web at http://www.girinst.org/Repbase_Update.html. Copyright (c) 2005 S. Karger AG, Basel.